Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0422 ATGCAACGCGCAAGATCGCTCCTAACAAGGTTTAATCCAATCGCATACAGATACAGATACAGATTCCAAAGCCGAACCCTGTGTTCTTCGAACGAGGAAGTTGTGGTTGTTGAAGGAAACGGTTACTCGAGAATGGCAATTCTCAACAGACCCACTGCTCTCAACGCCCTCAACACCTCCATGGTGGCTACCCTCACCAAACTTTACCGAGCTTGGGAAGATAACCCCGACGTTGGCTTTGTCACCATCAAGGGCAGTGGTCGGGCATTTGCAGCTGGCGGTGATATTGTCGCCATTTACCATTTCATCAACAGAGCCAACATGGAAGCCTGCAAGGAATTCTTCCGAACAATATATCGTTTTATTTACGTCATAGGTACATATATGAAGCCACATATCGCTCTTCTGAATGGCATTACCATGGGTGGTGGAGCTGGAATTTCAATCCCCGGCACTTTTCGAGTTGCAACCGACAAAACTATTTTTGCTACCCCTGAAGTTCTTATTGGATTTCACCCTGATGCTGGAGCATCTTTCTACCTTTCACATTTACCTGGTCACTTAGGCGAATACTTGGCCCTAACAGGGGAAAAGCTCAATGGAGTAGAGATGGTTACTTGTGGACTTGCTACACACTACTCACTAACTGCAAGGCTCCCGTTAATTGAAGAACAGCTGGGGAAATTAGTTACTGATGATCCTTCTGTCATTGAAACCACTTTAGAACAGTATGGTGACCTTGTACACTCAGATAGCAGTAGTGTACTTCAAAGGATTGAAATTGTAGATAAATGCTTTTGCCATGACACAGTGGAAGAGATTGTTGATTCTTTGGAAAGAGTGGCAAGTGAAACAAATGATGCATGGTGCATTTCTACCCTAAATAGACTTAAAGAAGCTTCGCCATTGAGCTTGAAGGTTTCCTTGAGATCAATACGAGAGGGTAGATTTCAGACTCTTGACCAGTGCTTGTCACGTGAGTACCATATGACTTTACAAGCAACATCTAAGCAGATTTCTGGTGACTTTTGTGAGGGGATAAGGTCTCGTGTGGTGGATAAGGACTTTGCACCAAAGTGGGATCCTCCAACATTGGAAAAGGTGTCTCAAGACATGGTGGATCAGTACTTCTCACCTCTAAGTGAATTTGAACCTGGTCTAGGGCTCCCCACAAAAGTTCGAGAAGCATTTTTGTAG 1197 0.4436 MQRARSLLTRFNPIAYRYRYRFQSRTLCSSNEEVVVVEGNGYSRMAILNRPTALNALNTSMVATLTKLYRAWEDNPDVGFVTIKGSGRAFAAGGDIVAIYHFINRANMEACKEFFRTIYRFIYVIGTYMKPHIALLNGITMGGGAGISIPGTFRVATDKTIFATPEVLIGFHPDAGASFYLSHLPGHLGEYLALTGEKLNGVEMVTCGLATHYSLTARLPLIEEQLGKLVTDDPSVIETTLEQYGDLVHSDSSSVLQRIEIVDKCFCHDTVEEIVDSLERVASETNDAWCISTLNRLKEASPLSLKVSLRSIREGRFQTLDQCLSREYHMTLQATSKQISGDFCEGIRSRVVDKDFAPKWDPPTLEKVSQDMVDQYFSPLSEFEPGLGLPTKVREAFL* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0422 398 Pfam Enoyl-CoA hydratase/isomerase 44 377 IPR045004 -
Amo12g0422 398 SUPERFAMILY ClpP/crotonase 33 363 IPR029045 -
Amo12g0422 398 CDD crotonase-like 48 212 - -
Amo12g0422 398 Gene3D - 29 387 - -
Amo12g0422 398 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED 26 397 IPR032259 GO:0003860
Amo12g0422 398 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-LIKE PROTEIN 1, MITOCHONDRIAL 26 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0422 Amo-Chr12 6911884 6916243 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0422 1 398 Acyl Lipid Metabolism Gene Families AT4G31810 58.680 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0422 K05605 - gmx:100801676 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0422 12 6911884 6916243 Amo12g0422 12 6911884 6916243 ECH
Amo12g0422 12 6911884 6916243 Amo02g0503 02 6291704 6296194 hybridization