Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01652 ATGGTGGCCACTGATCCAGTTAGAGTTCTTGTCACTGGAGCTGCTGGGCAAATTGGATATGCACTTGTTCCAATGATTGCAAGAGGGGCAATGCTGGGCCCAGATCAGCCTGTGATTCTGCACATGCTTGACATTGAACCAGCAGCAGAGGCCTTGAAAGGGGTGAAGATGGAGCTGGTTGATGCTGCTTTTCCACTTCTTAAAGGTGTTGTTGCTACTACTGATGTTGTTGAAGCTTGCAAGAATGTGAACATTGCTGTGATGGTGGGTGGATTCCCCCGGAAGGAAGGAATGGAAAGAAAAGATGTGATGTCTAAAAATGTGTCAATTTACAAGGCTCAAGCTTCAGCTCTGGAGCAAAATGCTGCAGCAGATTGTAAGGTGCTGGTGGTTGCCAATCCAGCAAACACCAATGCTCTCATTTTGAAAGAGTTTGCTCCTTCAATCCCTGAGAAAAACATCACCTGTCTTACAAGGCTTGATCACAACAGAGCCTTAGGACAAATCTCTGAGAGACTCAATGTTCATGTCAGTGATGTAAAAAATGTCATCATTTGGGGCAATCACTCATCAACCCAATATCCAGATGTCAACCATGCCACAGTCACTGCCAATGGAGCACAGAAGCCAGTCAGAGAATTAGTTGCTGATGATAACTGGCTAAACAGTGAGTTCATCACCACTGTTCAGCAACGTGGAGCTGCCATTATTAAAGCCAGAAAGCTGTCTAGTGCATTATCTGCAGCAAGTGCTGCCTGTGATCACATTCGTGACTGGGTTCTAGGAACTCCTAAGGAATCATGGGTATCAATGGGAGTGTATTCTGATGGATCTTATGGTGTTCAACCTGGTCTCATATACTCTTTCCCTGTTACTTGTGAGAAAGGAGATTGGACCATTGTTCAAGGTCTGAAGATTGATGAGTTCTCAAGGGATAAGATGGACAAAACGGCACAAGAGCTGGTTGAGGAGAAGGAATTGGCCAAATCATGCCTTAATTGA 1002 0.4491 MVATDPVRVLVTGAAGQIGYALVPMIARGAMLGPDQPVILHMLDIEPAAEALKGVKMELVDAAFPLLKGVVATTDVVEACKNVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQNAAADCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLNVHVSDVKNVIIWGNHSSTQYPDVNHATVTANGAQKPVRELVADDNWLNSEFITTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPKESWVSMGVYSDGSYGVQPGLIYSFPVTCEKGDWTIVQGLKIDEFSRDKMDKTAQELVEEKELAKSCLN 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01652 333 PIRSF Lac_mal_DH 3 331 IPR001557 GO:0016616|GO:0019752
Vimu9g01652 333 NCBIfam malate dehydrogenase, NAD-dependent 8 329 IPR011274 GO:0006108|GO:0030060
Vimu9g01652 333 Gene3D - 157 333 IPR015955 GO:0003824|GO:0016616
Vimu9g01652 333 ProSitePatterns Malate dehydrogenase active site signature. 157 169 IPR001252 GO:0006108|GO:0016615
Vimu9g01652 333 NCBIfam malate dehydrogenase 5 327 IPR010945 GO:0006108|GO:0016615
Vimu9g01652 333 FunFam Malate dehydrogenase 157 333 - -
Vimu9g01652 333 CDD MDH_cytoplasmic_cytosolic 5 328 IPR011274 GO:0006108|GO:0030060
Vimu9g01652 333 SUPERFAMILY LDH C-terminal domain-like 158 332 IPR015955 GO:0003824|GO:0016616
Vimu9g01652 333 Hamap Malate dehydrogenase [mdh]. 3 332 IPR010945 GO:0006108|GO:0016615
Vimu9g01652 333 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 155 IPR036291 -
Vimu9g01652 333 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 158 330 IPR022383 GO:0016616
Vimu9g01652 333 Pfam lactate/malate dehydrogenase, NAD binding domain 7 154 IPR001236 GO:0016491
Vimu9g01652 333 Gene3D - 4 156 - -
Vimu9g01652 333 FunFam Malate dehydrogenase 4 156 - -
Vimu9g01652 333 PANTHER MALATE DEHYDROGENASE 4 332 IPR010945 GO:0006108|GO:0016615
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01652 Vimu-Chr9 25747909 25751298 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01652 K00025 - qsa:O6P43_027000 587.415