Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00033 ATGAACATGGAAATGTTTGCTTTGGAAATTATGGACAATACGGTCCTTAAAAAATCTGTTCTTGTTTTATTTTGTACTTTTTTGTTTTGGAAGATCGTTAGATACATGTGTGGTCTTCTCAAAGTTGATAAGGAACCGATCACTGTATTGGTCACTGGTGCTGCAGGACAAATTGGTTATGCTCTTGTTCCAATGATTGCAAGAGGGATGATGCTAGGCCCAAATCAACCTGTAATTCTTCATATGCTTGATATTGAACCAGGATTAGAAGCCCTTAAAGGGGTGAAGATGGAACTGATTGATGGTGCTTTCCCACTTCTTAGAGGTGTTGTTGCTACTACGGATGTTGTTGAAGCTTGCAAGGATGTTAACATTGCTGTTATGCTTGGTGGATCCCCAAGGAAGGAAGGAATGGAAAGAAAAGATGTAATGTCTAAGAATGTTTCAATTTACAAGGCTCAAGCTTCAGCTTTGGAGGAACATGCTGCTGCAGATTGTAAAGTGCTAGTGGTAGCCAATCCAGCAAACACAAATGCTCTAATATTGAAAGAATTTGCTCCATCAATCCCGGAGAAAAATATCACATGTCTTACTAGACTTGATCATAATAGAGCACTAGGCCAAATCTCTGAGAAGCTAAATGTTCACGTTAGTGATGTAAAAAATGTCATTATTTGGGGCAATCACTCCTCAACTCAATATCCAGACGTTAACCATGCAACCGTCACAACAAGTAATGGACACAAGCCTGTTAGAGAATTAGTTGCTGATGATAATTGGCTAAATAGCGAGTTCATCACAACTATTCAACAGCGTGGGGGTGCAATTATCAAAGCAAGGAAGCTTTCTAGTGCATTATCAGCAGCAAGTGCTGCCTGTGATCATATACGTGATTGGGTTCTAGGTACACCAAAGGGGACATGGGTATCAATGGGAGTGTATTGTGATGGGTCTTATGGTATTCAACCTGGCCTCATTTACTCTTTTCCAGTTACATGTGAAAAAGGAGAATGGAATATTGTACAAGGCCTCAAGGTAGATGAATTCTCAAGGGAAAAGATGGATAAAACGGCCCAAGAACTTATTGAGGAGAAAACATTGGCCCAAAATATATAA 1116 0.397 MNMEMFALEIMDNTVLKKSVLVLFCTFLFWKIVRYMCGLLKVDKEPITVLVTGAAGQIGYALVPMIARGMMLGPNQPVILHMLDIEPGLEALKGVKMELIDGAFPLLRGVVATTDVVEACKDVNIAVMLGGSPRKEGMERKDVMSKNVSIYKAQASALEEHAAADCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSNGHKPVRELVADDNWLNSEFITTIQQRGGAIIKARKLSSALSAASAACDHIRDWVLGTPKGTWVSMGVYCDGSYGIQPGLIYSFPVTCEKGEWNIVQGLKVDEFSREKMDKTAQELIEEKTLAQNI 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00033 371 PIRSF Lac_mal_DH 43 371 IPR001557 GO:0016616|GO:0019752
Trre15g00033 371 FunFam Malate dehydrogenase 197 371 - -
Trre15g00033 371 NCBIfam malate dehydrogenase 44 367 IPR010945 GO:0006108|GO:0016615
Trre15g00033 371 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 198 367 IPR022383 GO:0016616
Trre15g00033 371 Gene3D - 197 371 IPR015955 GO:0003824|GO:0016616
Trre15g00033 371 FunFam Malate dehydrogenase 44 196 - -
Trre15g00033 371 NCBIfam malate dehydrogenase, NAD-dependent 49 368 IPR011274 GO:0006108|GO:0030060
Trre15g00033 371 CDD MDH_cytoplasmic_cytosolic 45 368 IPR011274 GO:0006108|GO:0030060
Trre15g00033 371 Gene3D - 44 196 - -
Trre15g00033 371 Pfam lactate/malate dehydrogenase, NAD binding domain 49 194 IPR001236 GO:0016491
Trre15g00033 371 PANTHER MALATE DEHYDROGENASE 44 368 IPR010945 GO:0006108|GO:0016615
Trre15g00033 371 ProSitePatterns Malate dehydrogenase active site signature. 197 209 IPR001252 GO:0006108|GO:0016615
Trre15g00033 371 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 196 IPR036291 -
Trre15g00033 371 SUPERFAMILY LDH C-terminal domain-like 198 369 IPR015955 GO:0003824|GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00033 Trre-Chr15 323945 326798 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00033 K00025 - gmx:100783188 625.165