Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10109 ATGACGATGATGCAAATCAGAAGGGCAGGGTGGTTAGTACAAAGGGCGAAGCAGCTTAGTCTTCACAGATACACATACAGAACCATCTCTCACTCTGTTCCTCATCTAGACGATAATAACGTTTTGGTTGAAGGAAATGGCTGCTCTAGAATGGCCGTTCTCAATAGACCTTCTGCTCTCAATGCTATCAACACCTCCATGGCTGCTAGACTGCATAAGCTTTATAGAAGTTGGGAAGATAACCCTGATATTGGTTTTGTGATGGTGAAGGGCAGTGGCCGGGCATTTGCAGCTGGCGGGGATATTGTTGCACTTTACCATTTGCTAAACAAAGGGGACATGGAAGCCTGTAAAGAATTTTTTAGAACAATATATAGTTTTATATACGTGATAGGTACATATATGAAGCCAAATGTGGCTCTTCTGAATGGCATTACCATGGGTGGTGGGGCAGGAATTTCAATCCCAGGGACATTCCGGGTTGCAACAGACAAAACTATTTTTGCTACCCCTGAAGTTCTTATTGGATTCCATCCTGACGCTGGAGCATCTTTTTATCTTTCACATCTACCTGGTCACTTAGGAGAATACTTGGCTCTAACAGGGGAAAAGCTCAATGGAGTAGAGATGGTTACCTGTGGACTTGCTACCCACTATTCGCTATGTGCAAGGCTTCCATTAATCGAAGAACAGCTAGGGAAATTGGTTACCGATGATCCGTCTGTCATTGAAACCACTTTAGAACAGTATGGTGATCTTGTGCATCCAGATAGCACTAGTGTACTACAAAGGCTTGAAATTCTAGATAAATGCTTTCACCATGACACAGTTGAAGAGATTGTTGATGCCCTGGAAATTGAGGCAAGTGAAACAAATGATGCATGGTGTATTTCTACCCTAAATAGACTTAAAGAAGCTTCCCCATTGAGCTTGAAGGTTTCCTTGAGATCTATACGAGAAGGTAGATTTCAGACCCTTGATCAGTGCTTGTCACGTGAGTACCATATGACTTTACAAGGAATATCTAAGCAGATATCTGGTGACTTCTGTGAGGGAGTGAGGGCACGTGTGGTAGACAAGGACATGGCACCAAAGTGGGATCCTCCAACCTTGGAAATGGTGTCTCAAGATATGGTGGATCAGTACTTCTTACCTCTAAGTGAATTTGAACCTGATCTAGACCTGCCCACAAAAGTTCGTGAAGCATTTTTGTAG 1215 0.4305 MTMMQIRRAGWLVQRAKQLSLHRYTYRTISHSVPHLDDNNVLVEGNGCSRMAVLNRPSALNAINTSMAARLHKLYRSWEDNPDIGFVMVKGSGRAFAAGGDIVALYHLLNKGDMEACKEFFRTIYSFIYVIGTYMKPNVALLNGITMGGGAGISIPGTFRVATDKTIFATPEVLIGFHPDAGASFYLSHLPGHLGEYLALTGEKLNGVEMVTCGLATHYSLCARLPLIEEQLGKLVTDDPSVIETTLEQYGDLVHPDSTSVLQRLEILDKCFHHDTVEEIVDALEIEASETNDAWCISTLNRLKEASPLSLKVSLRSIREGRFQTLDQCLSREYHMTLQGISKQISGDFCEGVRARVVDKDMAPKWDPPTLEMVSQDMVDQYFLPLSEFEPDLDLPTKVREAFL. 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10109 404 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED 37 398 IPR032259 GO:0003860
Seca4g10109 404 FunFam Probable 3-hydroxyisobutyryl-CoA hydrolase 2 35 399 - -
Seca4g10109 404 Gene3D - 36 399 - -
Seca4g10109 404 CDD crotonase-like 41 218 - -
Seca4g10109 404 Pfam Enoyl-CoA hydratase/isomerase 50 383 IPR045004 -
Seca4g10109 404 SUPERFAMILY ClpP/crotonase 39 369 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10109 Seca-Chr4 234698856 234707990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10109 2 404 Acyl Lipid Metabolism Gene Families AT4G31810 59.459 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10109 K05605 - gmx:100801676 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10109 4 234698856 234707990 Seca4g10109 4 234698856 234707990 ECH