LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr10g0540	ATGATTCTCTTGCACATGCATTTCGTGTGGACTTAGTTTTGGTATATGATTGCCTTGTTGTAGAGGAATAAACTAATCATGGAGATGTTAGCATGGGAGATTGTGGACTACATAGTTTTCAAAAAAATTCTTCTTGTCTTATTTTGTCTTTTATTGTTTTGGAAGATCATTAGATACATGTTCAGTCTTCTCAAATCAGAGACGGAACCAATCACTGTATTGGTTACCGGTGCTGCAGGGCAAATTGGTTATGCTCTTGTTCCAATGATTGCAAGAGGGGCAATGCTGGGCCCAAATCAGCCTGTGATTCTGCATATGCTTGACATTGAACCAGCAGCAGAGGCCTTAAAAGGGGTGAAGATGGAACTAATTGATGCTGCTTTTCCACTTCTTAGAGGTGTTGTTGCTACTACGGATGTTGTGGAAGCTTGCAAGGATGTCAATATTGCTGTGATGGTGGGTGGATTCCCACGGAAGGAAGGAATGGAAAGAAAAGATGTGATGTCTAAAAATGTCTCAATTTACAAGGCTCAAGCTTCAGCCTTAGAGAAACATGCTGCAGCAGATTGTAAGGTGGTAGTGGTTGCTAATCCAGCAAACACCAATGCTCTCATTTTGAAAGAATTTGCTCCTTCAATCCCAGAGAAAAATATTACCTGTCTTACACGACTTGATCATAATAGAGCATTAGGCCAAATCTCTGAGAGGTTAAATGTTCATGTCAGTGATGTGAAAAATGTCATCATATGGGGCAATCATTCTTCAACCCAATACCCAGATGTCAACCATGCAACCGTCACTACAAGTAGTGGACAAAAGACAGTTAGAGAATCAATTGTTGATGATAATTGGCTAAACACTGAGTTCATCACCACTGTTCAACAACGTGGGGCTGCCATTATTAAAGCTAGAAAACTATCTAGTGCATTATCAGCAGCAAGTGCTGCTTGTGATCATATCCGTGATTGGGTTCTAGGTACTCCTAAGGGAACATGGGTATCCATGGGAGTGTATTCTGATGGATCTTATGGTGTTCAACCTGGCCTCATTTACTCATTCCCAGTTACATGTGAGAAAGGAGACTGGACTATTGTACAGGGGCTCAAGATTGATCAATTCTCAAGGGAAAAGATGGACAAAACAGCCCAAGAACTCGTTGAGGAAAAAACATTGGCCATGTCATGCCTTAATTAA	1194	0.4095	MILLHMHFVWTFWYMIALLRNKLIMEMLAWEIVDYIVFKKILLVLFCLLLFWKIIRYMFSLLKSETEPITVLVTGAAGQIGYALVPMIARGAMLGPNQPVILHMLDIEPAAEALKGVKMELIDAAFPLLRGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAADCKVVVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLNVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSSGQKTVRESIVDDNWLNTEFITTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPKGTWVSMGVYSDGSYGVQPGLIYSFPVTCEKGDWTIVQGLKIDQFSREKMDKTAQELVEEKTLAMSCLN*	398

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr10g0540	395	Gene3D	-	66	218	-	-
	Apr10g0540	395	ProSitePatterns	Malate dehydrogenase active site signature.	219	231	IPR001252	GO:0006108\|GO:0016615
	Apr10g0540	395	PANTHER	MALATE DEHYDROGENASE	49	395	IPR010945	GO:0006108\|GO:0016615
	Apr10g0540	395	TIGRFAM	MDH_euk_cyt: malate dehydrogenase, NAD-dependent	71	392	IPR011274	GO:0006108\|GO:0030060
	Apr10g0540	395	CDD	MDH_cytoplasmic_cytosolic	67	391	IPR011274	GO:0006108\|GO:0030060
	Apr10g0540	395	PANTHER	MALATE DEHYDROGENASE 3, CYTOPLASMIC	49	395	-	-
	Apr10g0540	395	TIGRFAM	MalateDH-SF1: malate dehydrogenase	67	389	IPR010945	GO:0006108\|GO:0016615
	Apr10g0540	395	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	53	218	IPR036291	-
	Apr10g0540	395	PIRSF	Lac_mal_DH	65	392	IPR001557	GO:0016616\|GO:0019752
	Apr10g0540	395	SUPERFAMILY	LDH C-terminal domain-like	220	394	IPR015955	GO:0003824\|GO:0016616
	Apr10g0540	395	Gene3D	-	219	395	IPR015955	GO:0003824\|GO:0016616
	Apr10g0540	395	Pfam	lactate/malate dehydrogenase, NAD binding domain	71	216	IPR001236	GO:0016491
	Apr10g0540	395	Pfam	lactate/malate dehydrogenase, alpha/beta C-terminal domain	220	389	IPR022383	GO:0016616

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr10g0540	Apr-Chr10	12488854	12492005	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr10g0540	K00025		-	gmx:100783188	645.58

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr10g0540	10	12488854	12492005	Apr10g0540	10	12488854	12492005	ECH