Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00034 ATGGCGATGCAATGGAGAAGAAAGGCAGTGTGGTGGCTGTTACAACAACATCATCATCATCACGGAAGCCGAAGCACGACTCTTTCCTCCTCCTCCGTCGATGATGATCATCTTCAACAACAGGTTTTGGTTGATGGCAGAAATGGATACTCCAGACTCGCCCTTCTCAACAGACCATCCGCTCTCAATGCCATCAACACCTCCATGGCAGCTAGAGTGCATCAACTATATAAAAGTTGGGAGGATAACCGTGATATAGGGTTTGTTATGGTCAAGGGCAGTGGCCGGGCATTCGCAGCTGGTGGAGATATTGTTGCGCTTTACCGTTTTATTAAAGAAGGGAACATGGAAGCCTGCAAAGAATTTTTTAGAACAATATATAGTTTTATATACCTGATAGGTACATATTTGAAGCCACAAGTAGCTCTTCTGAATGGCATTACCATGGGTGGTGGGGCAGGAATTTCAATCCCTGGTACATTCCGAGTTGCAACAGAGAAAACTGTTTTTGCTACCCCTGAAGTTCTTATTGGATTCCATCCTGATGCTGCAGCATCTTTTTACCTTTCACGTCTACCTGGTCACTTAGGAGAGTACTTGGCTCTGACAGGGGAAAAGCTCAACGGAGTAGAGATGGTTGCATGTGGGCTTGCTACTCACTATTCGCCACTTGCAAGGCTTCCACTGATCGAAGAACAGCTAGGGAAATTGGTTACTGATGACCCATCTGTCATAGAATCCACTTTAGAACAGTATGGTGATCTCATACACCCAGACTGCAGTAGTGTGTTACAAAGGCTTGAAATTCTAGATAAATGCTTTTGCCATGACACAGTTGAAGAGATTGTTGATGCATTGGAAGTTGCAGCAAGTGAAACAAACGATGCGTGGTGTATTTCTACCCTAAATAGACTTAAAGAAGCTTCACCATTGAGCTTGAAGGTTTCCTTGAGATCTATACGAGAAGGTAGATTTCAAACCCTTGATCGGTGCTTGTTGCGCGAGTACCGAATGACTTTACAAGCAATATCTAGACAGATATCTGGTGACTTTTGTGAGGGTGTGAGGGCACGCGTGGTGGACAAGGACATGGCACCGAAGTGGGATCCTCCAACTCTGGAAAAGGTGTCTCAAGATATGGTGGATCAATACTTCTTACCTCTAAGTGAATTTGAGCCTGATTTAGAGCTACCTACAAAATCCCGTGAAGCATTTTTGTAG 1221 0.4439 MAMQWRRKAVWWLLQQHHHHHGSRSTTLSSSSVDDDHLQQQVLVDGRNGYSRLALLNRPSALNAINTSMAARVHQLYKSWEDNRDIGFVMVKGSGRAFAAGGDIVALYRFIKEGNMEACKEFFRTIYSFIYLIGTYLKPQVALLNGITMGGGAGISIPGTFRVATEKTVFATPEVLIGFHPDAAASFYLSRLPGHLGEYLALTGEKLNGVEMVACGLATHYSPLARLPLIEEQLGKLVTDDPSVIESTLEQYGDLIHPDCSSVLQRLEILDKCFCHDTVEEIVDALEVAASETNDAWCISTLNRLKEASPLSLKVSLRSIREGRFQTLDRCLLREYRMTLQAISRQISGDFCEGVRARVVDKDMAPKWDPPTLEKVSQDMVDQYFLPLSEFEPDLELPTKSREAFL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00034 406 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED 38 401 IPR032259 GO:0003860
Trre15g00034 406 FunFam Probable 3-hydroxyisobutyryl-CoA hydrolase 2 36 401 - -
Trre15g00034 406 CDD crotonase-like 42 227 - -
Trre15g00034 406 Pfam Enoyl-CoA hydratase/isomerase 53 385 IPR045004 -
Trre15g00034 406 Gene3D - 37 401 - -
Trre15g00034 406 SUPERFAMILY ClpP/crotonase 43 371 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00034 Trre-Chr15 328136 333453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00034 3 406 Acyl Lipid Metabolism Gene Families AT4G31810 58.477 2.44e-179 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00034 K05605 - gmx:100801676 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00034 15 328136 333453 Trre15g00034 15 328136 333453 ECH