Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10108 ATGGAAATGTTTCCTTGGGAGATTGCGGACTCTACAGTTCTTAAAAAAATCCTTCTAGTTTTATTTTGTATTTTTTTGTTTTGGAAGATCATTAGATACATGTGTGGTCTTCTCAAAACAGAGAAGGAACCAGTCACAGTATTGGTCACCGGTGCTGCAGGGCAAATTGGCTATGCTCTTGTTCCAATGATTGCAAGAGGGATGATGCTGGGTCCAAATCAGCCTGTAATTCTACATATGCTTGATATTGAACCAGCTGCAGAGGCCTTAAAAGGGGTGAAGATGGAACTGATTGATGCTGCTTTACCACTTCTTAGAGGTGTTGTTGCAACTACGGATGTTGTTGAAGCTTGCAAGGATGTTAACATTGCTGTTATGGTGGGTGGATTCCCACGGAAGGAAGGAATGGAAAGAAAAGATGTGATGTCTAAAAATGTATCAATTTACAAGGCTCAAGCTTCAGCCTTGGAGCAACATGCTGCTGCAGACTGTAAAGTGCTAGTGGTTGCCAATCCAGCAAACACTAATGCCCTCATTTTGAAAGAATTTGCACCTTCAATCCCTGAGAAAAATATCACATGTCTTACACGACTTGATCACAATAGAGCACTAGGCCAAATCTCTGAGAGGCTAAAAGTTCATGTTAGTGATGTAAAAAATGTCATCATTTGGGGCAATCACTCCTCAACACAATATCCAGATGTCAACCATGCAACCGTCACCACAAGTAGTGGACAGAAGCCTGTCAGAGAATTAGTTGCTGATGATAACTGGCTAAACACTGAGTTCATCACCACTGTTCAGCAGCGTGGGGCTGCTATTATTAAAGCTAGGAAGCTGTCTAGTGCATTATCAGCAGCAAGTGCTGCTTGTGATCACATACGTGATTGGGTTCTAGGTACTCCTAAGGAAAGTTGGGTATCAATGGGAGTTTATTCTGATGGATCTTATGGTATCCAACCTGGCCTCATTTACTCTTTTCCTGTCACATGTGAGAAAGGAGACTGGAATATTGTACAGGGGCTCAAGATCGATCAATTTTCAAGGGATAAGATGGATAAAACGGCTCAAGAGCTCACTGAGGAGAAAACATTGGCTAAGTCATGCCTCAATTGA 1116 0.4203 MEMFPWEIADSTVLKKILLVLFCIFLFWKIIRYMCGLLKTEKEPVTVLVTGAAGQIGYALVPMIARGMMLGPNQPVILHMLDIEPAAEALKGVKMELIDAALPLLRGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAADCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSSGQKPVRELVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPKESWVSMGVYSDGSYGIQPGLIYSFPVTCEKGDWNIVQGLKIDQFSRDKMDKTAQELTEEKTLAKSCLN. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10108 371 ProSitePatterns Malate dehydrogenase active site signature. 195 207 IPR001252 GO:0006108|GO:0016615
Seca4g10108 371 NCBIfam malate dehydrogenase 42 365 IPR010945 GO:0006108|GO:0016615
Seca4g10108 371 FunFam Malate dehydrogenase 42 194 - -
Seca4g10108 371 Gene3D - 42 194 - -
Seca4g10108 371 Gene3D - 195 371 IPR015955 GO:0003824|GO:0016616
Seca4g10108 371 PANTHER MALATE DEHYDROGENASE 41 370 IPR010945 GO:0006108|GO:0016615
Seca4g10108 371 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 196 367 IPR022383 GO:0016616
Seca4g10108 371 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 33 194 IPR036291 -
Seca4g10108 371 SUPERFAMILY LDH C-terminal domain-like 196 370 IPR015955 GO:0003824|GO:0016616
Seca4g10108 371 NCBIfam malate dehydrogenase, NAD-dependent 47 367 IPR011274 GO:0006108|GO:0030060
Seca4g10108 371 FunFam Malate dehydrogenase 195 371 - -
Seca4g10108 371 CDD MDH_cytoplasmic_cytosolic 43 366 IPR011274 GO:0006108|GO:0030060
Seca4g10108 371 Pfam lactate/malate dehydrogenase, NAD binding domain 46 192 IPR001236 GO:0016491
Seca4g10108 371 PIRSF Lac_mal_DH 41 369 IPR001557 GO:0016616|GO:0019752
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10108 Seca-Chr4 234693656 234696663 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10108 K00025 - gmx:100783188 644.425