Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03417 ATGTGTGGTCTTCTCAAAGTTGACAAGGAACCAGTCACAGTATTAGTCACCGGTGCTGCAGGACAAATTGGTTATGCTCTTGTTCCAATGATTGCAAGAGGGTTGATGCTAGGTTCAAATCAGCCTGTAATTTTGCATATGCTTGATATTGAACCAGCAGCAGAGTCCCTTAAAGGGGTGAAGATGGAACTGATTGATGCTGCTTTCCCACTTCTTAGAGGTGTTGTTGCTACTACGGATGTTGTTGAAGCTTGTAAGGATGTAAACATTGCTGTTATGCTTGGTGGATTCCCAAGAAAGGAAGGAATGGAAAGAAAAGATGTAATGTCTAAAAATGTTTCAATTTACAAGGCTCAAGCTTCAGCTCTAGAGGAGCATGCTGCAGCAGATTGTAAAGTGCTAGTGGTTGCAAATCCAGCAAACACAAATGCTCTAATATTGAAAGAATTTGCTCCTTCAATCCCTGAGAAAAATATCACATGTCTTACTAGACTTGATCATAATAGAGCATTAGGCCAAATCTCTGAGAAGCTAAATGTTCATGTTAGTGATGTTAAAAATGTCATCATATGGGGAAATCACTCTTCAACTCAATATCCAGACGTCAACCACGCAGTTGTCACAACAAGTAACGGCCACAAGCCTGTCAGAGAATTAGTTGCGGATGATAACTGGTACATGCTAAATACCGAGTTCATCACAACAGTTCAGGAGCGTGGGGGTGCCATTATCAAAGCGAGGAAATTGTCTAGTGCATTATCAGCAGCAAGTGCTGCTTGTGATCATATACGTGATTGGGTTTTAGGTACACCTAAGGGAACATGGGTATCAATGGGAGTGTATTCTGATGGGTGTTATGGTATCCAATCTGGTCTCATTTATTCTTTTCCTGTTACTTGTGACAAAGGAGAATGGAATATTGTACAAGGTTTGAAGATTGATGAATTCTCAAGGGAAAAGATGGACAAAACGGCCCAAGAGCTCATTCAAGAGAAAAAATTGGCTATAAGAAGAACAGCGACTTGGTTGCTACATCATCAGCTTAGCCGAACCCTTTCTCTCTCCTCCGTGGATCACGATTACGTTTTGGTTGAAGGTAATGGATACTCAAGAATGTCCCTTCTCAACAGACCCTCCTCCCTCAATGCCATCAACACTCACATGGCTGCTAGACTTCATCAACTTTACACAAGTTGGGAGCATAACCCTCATATCGGTTTTCTCATGCTCAAGGGCACTGGCCGCTCTTTCGCTGCTGGTGGAGATATTGTCGCTCTTTACCGTTTTCTAAACAAAGGGAACATAGAAGCCTGTAAAGAATTTTTTAGAACAATTTATAGTTTTATATACCTGCTAGGTACATATTTGAAGCCACATGTAGCTCTTCTGAATGGCATTACCATGGGTGGTGGGGCAGGAATTTCTATCCCTGGGACATTCAGAGTTGCAACAGACAAAACTGTTTTTGCTACACCTGAAGTTCTTATTGGATTCCATCCTGATGCTGGAGCATCTTTTTACCTTTCACATCTACCTGGTCATATAGGAGAGTACTTGGCTCTGACAGGGGAAAAGCTCAACGGAGTAGAGATGGTTGCCTGTGGACTTGCTACACACTATTCACTAATTGCAAGGCTTCCACTAATTGAAGAACAGCTGAAGAAATTGGTTACGGATGACCCATCTGTCATAGAAGCCACTTTAGAACAGTATGGTGATCTTGTACACCCAGACAGCAGTAGTGTACTACAAAGGCTTGAAATTCTAGATAAATGCTTTTGCCATGACACAGTTGAAGAGATTGTTGATGCATTGGAAGCTGCAGCAAGTGAAACAAAAGATGCATGGTGCATTTCTACCCTAAATAGACTTAAAGAAGCTTCTCCATTGAGCTTGAAGGTTTCCTTGAGATCTATTCGAGAAGGTAGATTTCAGACCCTTGATCAGTGCTTGTTGCGTGAGTACCGTATGACTTTACAAGGAATATCTAAACATATATCTGGTGACTTCTGTGAGGGAGTGAGGGCGCGTGTGGTGGACAAAGACATGTCACCAAAGTGGGATCCTCCAACCTTGGAAAAGGTGTCTCAAGATATGGTGGATCAGTACTTCTTACCTCTTAGTGAATTTGAACCTGATTTAGAGCTTCCCACAAAGTCCCGTGAAGCGTTTTTGTAG 2178 0.4201 MCGLLKVDKEPVTVLVTGAAGQIGYALVPMIARGLMLGSNQPVILHMLDIEPAAESLKGVKMELIDAAFPLLRGVVATTDVVEACKDVNIAVMLGGFPRKEGMERKDVMSKNVSIYKAQASALEEHAAADCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVHVSDVKNVIIWGNHSSTQYPDVNHAVVTTSNGHKPVRELVADDNWYMLNTEFITTVQERGGAIIKARKLSSALSAASAACDHIRDWVLGTPKGTWVSMGVYSDGCYGIQSGLIYSFPVTCDKGEWNIVQGLKIDEFSREKMDKTAQELIQEKKLAIRRTATWLLHHQLSRTLSLSSVDHDYVLVEGNGYSRMSLLNRPSSLNAINTHMAARLHQLYTSWEHNPHIGFLMLKGTGRSFAAGGDIVALYRFLNKGNIEACKEFFRTIYSFIYLLGTYLKPHVALLNGITMGGGAGISIPGTFRVATDKTVFATPEVLIGFHPDAGASFYLSHLPGHIGEYLALTGEKLNGVEMVACGLATHYSLIARLPLIEEQLKKLVTDDPSVIEATLEQYGDLVHPDSSSVLQRLEILDKCFCHDTVEEIVDALEAAASETKDAWCISTLNRLKEASPLSLKVSLRSIREGRFQTLDQCLLREYRMTLQGISKHISGDFCEGVRARVVDKDMSPKWDPPTLEKVSQDMVDQYFLPLSEFEPDLELPTKSREAFL 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03417 725 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-LIKE PROTEIN 1, MITOCHONDRIAL 344 724 - -
Car07g03417 725 CDD MDH_cytoplasmic_cytosolic 10 335 IPR011274 GO:0006108|GO:0030060
Car07g03417 725 Gene3D - 9 161 - -
Car07g03417 725 SUPERFAMILY ClpP/crotonase 361 690 IPR029045 -
Car07g03417 725 TIGRFAM MDH_euk_cyt: malate dehydrogenase, NAD-dependent 14 336 IPR011274 GO:0006108|GO:0030060
Car07g03417 725 TIGRFAM MalateDH-SF1: malate dehydrogenase 9 334 IPR010945 GO:0006108|GO:0016615
Car07g03417 725 Gene3D - 162 347 IPR015955 GO:0003824|GO:0016616
Car07g03417 725 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED 344 724 IPR032259 GO:0003860
Car07g03417 725 Coils Coil 318 338 - -
Car07g03417 725 SUPERFAMILY LDH C-terminal domain-like 163 336 IPR015955 GO:0003824|GO:0016616
Car07g03417 725 Pfam lactate/malate dehydrogenase, NAD binding domain 14 159 IPR001236 GO:0016491
Car07g03417 725 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 161 IPR036291 -
Car07g03417 725 CDD crotonase-like 375 539 - -
Car07g03417 725 ProSitePatterns Malate dehydrogenase active site signature. 162 174 IPR001252 GO:0006108|GO:0016615
Car07g03417 725 Gene3D - 356 720 - -
Car07g03417 725 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 163 334 IPR022383 GO:0016616
Car07g03417 725 Pfam Enoyl-CoA hydratase/isomerase 373 704 IPR045004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03417 Car-Chr7 62238766 62245445 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03417 336 724 Miscellaneous Gene Families AT3G60510 61.058 1.96e-178 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03417 K05605 - gmx:100801676 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03417 07 62238766 62245445 Car07g03417 07 62238766 62245445 ECH