Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi3g0253 . . . . Adu09g02879 Adu03g04431 Aed1g1750 . Aev09g2727 . Ahy19g3043 . Aip09g03503 . . . Amo19g3908 . Apr8g2669 . Arst9g03841 Arst3g05861 . . . . . Bva14g02382 . . Cca02g02759 . . . Dod06g0321 . . . . . . . . . . . . . . . . . Lal12g0281 . . . . . . . Lapu7g02517 . Lasa6g04804 . . . . . . . . . . . . Mal1g0183 Mepo4g04885 . Mesa1g05294 . . . . Mtr1g4342 Phac7g00253 . Phco6g03063 Phco4g02106 . . Psa6g5337 . Pste4g00384 Pste3g02510 Pte18g00513 . . . Pumo3g00177 Pumo6g01371 Pvu7g0166 Pvu2g1866 Rops6g03448 Rops2g01470 Seca8g08032 Seca12g05554 Spst10g01568 Spst3g01969 Ssu7g0198 . Sto2g1130 Sto10g0037 . Tpr1g0175 Trre1g06208 . . Tsu01g05007 Vian3g00163 Vian1g02748 Vifa3g00155 Vifa6g01885 Vimu3g03693 Vimu11g01743 Viun7g04004 Viun3g02147 . Vivi5g04640 Vra8g2659 .
Vvi3g0254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0255 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0256 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0258 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva14g02383 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0259 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto2g1384 . . . . . . . . . . . . . . . . . . .
Vvi3g0260 . . . . . . . . . Aev05g0353 . Ahy15g0331 . Aip05g00327 . . . . . . . . . . . . . . . . . . . . . Dod02g0386 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0261 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0262 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi3g0253 Chr3 2169630 2191813 -
Adu Adu09g02879 Chr09 116442496 116445785 -
Adu Adu03g04431 Chr03 133287243 133288689 +
Aed Aed1g1750 Chr1 15069498 15072298 +
Aev Aev09g2727 Chr09 28030200 28033052 -
Ahy Ahy19g3043 Chr19 153179720 153183032 +
Aip Aip09g03503 Chr09 141713913 141717094 +
Amo Amo19g3908 Chr19 154791973 154795205 +
Apr Apr8g2669 Chr8 36444689 36447542 -
Arst Arst9g03841 Chr9 114327108 114330448 -
Arst Arst3g05861 Chr3 132051907 132052707 +
Bva Bva14g02382 Chr14 20494016 20495753 -
Cca Cca02g02759 Chr02 49071034 49073956 -
Dod Dod06g0321 Chr06 4531999 4535303 -
Lal Lal12g0281 Chr12 2009775 2012814 -
Lapu Lapu7g02517 Chr7 41573465 41576155 -
Lasa Lasa6g04804 Chr6 670647147 670650732 -
Mal Mal1g0183 Chr1 2049839 2052521 +
Mepo Mepo4g04885 Chr4 58154313 58157356 -
Mesa Mesa1g05294 Chr1 80198846 80201661 -
Mtr Mtr1g4342 Chr1 55141896 55145166 -
Phac Phac7g00253 Chr7 1192951 1196066 +
Phco Phco6g03063 Chr6 51637146 51639547 -
Phco Phco4g02106 Chr4 41477997 41481350 +
Psa Psa6g5337 Chr6 467449383 467453158 -
Pste Pste4g00384 Chr4 2933368 2935656 +
Pste Pste3g02510 Chr3 17893712 17897345 +
Pte Pte18g00513 Chr18 10934564 10938575 -
Pumo Pumo3g00177 Chr3 2252301 2255379 +
Pumo Pumo6g01371 Chr6 18461129 18463721 -
Pvu Pvu7g0166 Chr7 1090267 1093475 +
Pvu Pvu2g1866 Chr2 33389830 33392140 +
Rops Rops6g03448 Chr6 59187342 59190502 -
Rops Rops2g01470 Chr2 21516441 21519145 -
Seca Seca8g08032 Chr8 177939815 177943326 -
Seca Seca12g05554 Chr12 146666797 146669705 +
Spst Spst10g01568 Chr10 16354356 16356942 -
Spst Spst3g01969 Chr3 49140022 49141471 +
Ssu Ssu7g0198 Chr7 3260872 3263616 +
Sto Sto2g1130 Chr2 10035092 10035520 -
Sto Sto10g0037 Chr10 324188 327648 +
Tpr Tpr1g0175 Chr1 1398355 1401732 +
Trre Trre1g06208 Chr1 65778187 65781014 -
Tsu Tsu01g05007 Chr01 56826832 56829997 -
Vian Vian3g00163 Chr3 1306581 1308976 +
Vian Vian1g02748 Chr1 42226563 42228085 +
Vifa Vifa3g00155 Chr3 11731827 11735271 +
Vifa Vifa6g01885 Chr6 703924459 703926073 -
Vimu Vimu3g03693 Chr3 49482720 49485118 -
Vimu Vimu11g01743 Chr11 23140067 23141557 -
Viun Viun7g04004 Chr7 39550304 39552948 -
Viun Viun3g02147 Chr3 17866645 17869096 -
Vivi Vivi5g04640 Chr5 145024022 145026306 -
Vra Vra8g2659 Chr8 44486837 44489476 -
Vvi Vvi3g0254 Chr3 2195235 2197575 +
Vvi Vvi3g0255 Chr3 2202897 2204632 -
Vvi Vvi3g0256 Chr3 2204705 2207438 -
Vvi Vvi3g0257 Chr3 2208415 2209694 -
Vvi Vvi3g0258 Chr3 2213140 2224945 -
Bva Bva14g02383 Chr14 20496403 20503561 -
Vvi Vvi3g0259 Chr3 2225481 2228320 +
Sto Sto2g1384 Chr2 14988578 14990724 -
Vvi Vvi3g0260 Chr3 2231737 2242125 +
Aev Aev05g0353 Chr05 2527661 2530654 +
Ahy Ahy15g0331 Chr15 3988769 3992735 +
Aip Aip05g00327 Chr05 3682230 3686291 +
Dod Dod02g0386 Chr02 5178607 5183975 +
Vvi Vvi3g0261 Chr3 2246349 2248358 +
Vvi Vvi3g0262 Chr3 2253382 2255550 +
Aev Aev05g0353 Chr05 2527661 2530654 +
Ahy Ahy15g0331 Chr15 3988769 3992735 +
Aip Aip05g00327 Chr05 3682230 3686291 +
Dod Dod02g0386 Chr02 5178607 5183975 +