Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01568 ATGAACGTATGTTTAAGAATAATAATAATAGAAGGAGGATATGAGAAAAGCGTGTCTGTCTGTGGGATGGGATCGAAGGAAGAAATGGGCGGCACGGAGGAGGCGAGCCTGGATCGGCTTCCCTCCGCTCTGGTGGCCACCGTCATGACAAAGCTCGACATCGCCTCCATATGCTCTCTGGCCTCCACCTCCTCCACCTTCCGCTCCTGCGCCCGTCAAATCCTCTCTTTCCTCCCCTCTTTCCACCTCCTCGACATTGCTCCCACCGGAGACTTGCTCGGACCCTTGCTGCCGCCCAATCCCCACCTCACCACTCTCAAGGTTGATTGTTCCCGCCTCGATGATTCTGCCATCGCCTTCCTGCTCAAACCCTCCCTCCACGAGATCTCTCTCCACAATTGCGCCGATTTCAGTGGCCGACTCTTATCTGAGATCGGCTCCCGCTGCAAGGATCTGAGGTCTCTCTACCTGGGCTCCGTCGCAGAGCGAAGAGGGAGGGCCATTCATATTTCCGATCTGGAGGAGTTGCTCGGCGGTTGCTCCCACTTGGAAGCACTGATTCTGATGTTTGATGTCTCTCTCTTTCTACGTCACAACTTTGCTCGAGTGTGGGCTTCTGCCTCAGGAAAGCTCACTTCTCTTGAGATTGGCTACATTTCTTCAGTTACCGTCACTGAACTGCTGAGCCCAAATTTGGGATCCCATCTGCCGTCAAATCCTGTTCAACCATCCATACTTCCCAGAATTCAGAAACTATGTCTTAATGTAGACTATATAACTGATGCTATGATTAGCACAATATCCAAAGGTCTAATGTTTTTGACCCATTTGGATCTTCAAGACGCACCATTGATTGAACCAAGAATTACTTTTGACCTGACCAATGCTGGTCTTCAACAAATTAATCAACTTGGGAGATTGAAACATCTTTCATTGGTTCGAAGCCAAGAGTTTCTAATCACCTACTTTCGAAGAGTGAATGATCTGGGATTACTTCTAATGGCAGACAAGTGTGCCAACATAGAAAGCATATGCCTTGGTGGCTTTTGTCGTGTCACAGACACCGGTTTCAAAACTATCCTGCATTCTTGCACTCGCTTATACAAGCTTAAGGTCACTCATGGGACTCATTTAACTGATCTAGTTTTTCATGATATTTCGGCAACATCCCTTACTTTGACACATGTTAGCTTAAGATGGTGCAATCTGTTAACTAACCATGCTGTTTTGAGTTTGGCATCAAACAAGGAACTCAAAATTCTTGACTTGAGAGATTGCAGGAGCCTCGGGGATGAAGCTCTCCAGGCCATTGGCACTCTGCCAAGACTGAAAATTTTACTACTAGATGGCTCTGATATAACAGATGCAGGACTTTTGTACTTAAGACCCTCTGTTATTAGTTCACTGTATGCATTGTCTCTTCGAGGCTGCAAGAGACTAACAGATAAATGCATCACAGCTCTATTTAATGGCTGTTGTGTAATGGAATTGCGAGAACTGGATCTATCTAATCTTCCTAACCTCTCAGATAATGGAGTTCTGCTGCTGGCAAAAAGTCGGATTCCCTTCTTTGAACTCCGAATGCGACAGTGCCCCCTAGTTGGTGATACTGCAGTCATGGCATTAGCTTCAATGCTGATTGACGAGGCCAAACATGGAAGCAGTTTGCGCATGTTGGATCTTTATAACTGTGGTGGCATTACAGCTCTAGCATTTCGCTGGTTGAAGAAACCATATTTTCCAAAGCTCAAATGGTTGGGAGTGACCGGAAATGTTAATAGAGACATAGTAGATGCTTTAGCCAGAAGCAGACCTTTCTTACATGTGGCATGCCATGGTGAGGAGCTTGGGGCTGATCCCTATGCCACTTCAGATGGGTTATATACACATGATTATGATGATGTGGATGAATTTAAGAAGTGGCTTCTTGAAAACGGTATTGATAGTGACTTTGAAGAGATAGGCGATGCTGGAAATAACGATGAAATGGTTGTGTGA 1998 0.459 MNVCLRIIIIEGGYEKSVSVCGMGSKEEMGGTEEASLDRLPSALVATVMTKLDIASICSLASTSSTFRSCARQILSFLPSFHLLDIAPTGDLLGPLLPPNPHLTTLKVDCSRLDDSAIAFLLKPSLHEISLHNCADFSGRLLSEIGSRCKDLRSLYLGSVAERRGRAIHISDLEELLGGCSHLEALILMFDVSLFLRHNFARVWASASGKLTSLEIGYISSVTVTELLSPNLGSHLPSNPVQPSILPRIQKLCLNVDYITDAMISTISKGLMFLTHLDLQDAPLIEPRITFDLTNAGLQQINQLGRLKHLSLVRSQEFLITYFRRVNDLGLLLMADKCANIESICLGGFCRVTDTGFKTILHSCTRLYKLKVTHGTHLTDLVFHDISATSLTLTHVSLRWCNLLTNHAVLSLASNKELKILDLRDCRSLGDEALQAIGTLPRLKILLLDGSDITDAGLLYLRPSVISSLYALSLRGCKRLTDKCITALFNGCCVMELRELDLSNLPNLSDNGVLLLAKSRIPFFELRMRQCPLVGDTAVMALASMLIDEAKHGSSLRMLDLYNCGGITALAFRWLKKPYFPKLKWLGVTGNVNRDIVDALARSRPFLHVACHGEELGADPYATSDGLYTHDYDDVDEFKKWLLENGIDSDFEEIGDAGNNDEMVV 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01568 665 SMART LRR_CC_2 338 363 IPR006553 -
Spst10g01568 665 SMART LRR_CC_2 553 578 IPR006553 -
Spst10g01568 665 SMART LRR_CC_2 525 545 IPR006553 -
Spst10g01568 665 SMART LRR_CC_2 466 491 IPR006553 -
Spst10g01568 665 SMART LRR_CC_2 390 415 IPR006553 -
Spst10g01568 665 SMART LRR_CC_2 416 440 IPR006553 -
Spst10g01568 665 SMART LRR_CC_2 494 519 IPR006553 -
Spst10g01568 665 SMART LRR_CC_2 123 148 IPR006553 -
Spst10g01568 665 SUPERFAMILY RNI-like 326 592 - -
Spst10g01568 665 Gene3D Ribonuclease Inhibitor 525 611 IPR032675 -
Spst10g01568 665 Gene3D Ribonuclease Inhibitor 89 492 IPR032675 -
Spst10g01568 665 FunFam F-box/LRR-repeat protein 10 isoform A 74 490 - -
Spst10g01568 665 PANTHER UNCHARACTERIZED 385 575 - -
Spst10g01568 665 SUPERFAMILY RNI-like 75 313 - -
Spst10g01568 665 Pfam Leucine Rich repeat 415 437 IPR001611 GO:0005515
Spst10g01568 665 Pfam F-box domain 37 74 IPR001810 GO:0005515
Spst10g01568 665 SUPERFAMILY F-box domain 26 73 IPR036047 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01568 - - pvu:PHAVU_007G016400g 1172.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01568 10 16354356 16356942 Spst10g01568 10 16354356 16356942 ECH