Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00177 ATGGGTCTGGATCACCTGCCTTCCGCTGTGGTTGCGACGATCATGACGAAACTGGACATCGCTTCCATCTGCTCCTTGGCTTCCACCTCCTCCACCTTCCGCTCCTGCGCCCGACACATCCTCTCCTTCCTACCCTCTTTCCACCTTCTCGACATTGCGCCTTCCGGGGAGTTGCTGAGACCGTTGCTGCCGCCCAATCCCTACCTCACCAGTCTCAAGCTCGATTGCTGTCGCCTCGACGATTCCTCAATTGCCTTCTTGCTCAAACCCTCCTTGCACGACCTCTGTCTCCACAATTGCGCCGATTTCAGTGGCAGACTCTTGTCTGAGATTGGCACCCGATGCAGGCATCTCCGGTTAGCTTTCATCTCTCTCCCACATCTCACCGTTTACTACTTTCTACTCTTGTCGATTCATGTTGTTTGTGTCGTCTCCTTCAGGTCTCTCTACTTGGGTTCGGTGGCAGAGAAAAGAGGGAGGGCAATTCATATTACTGATCTCGAGGAGTTACTCGGCGGTTGCTCCCAGTTGGAAGCACTGATTCTGATGTTTGACGTCTCACTCTTTCTACGTCACAACTTTGCTCGAGTATGGGCTTCTGCCTCAGAGAAACTCACTTCTCTTGAGATTGGCTACATTTCTTCAGTTACAGTGACTGAACTGCTTAGCCCAAATTTGGGGTCCCATCTGCCCTCAAATCCTGTTCAACCATCCATACTTCCAAGCATTCAGAAACTATGTCTTAATGTAGACTATATAACTGATGCTATGGTTGGTACAATATCCAAAGGTCTCATCCTTTTGACCCATTTGGATCTTCAAGATGCACCACTGATTGAACCAAGAATTACATTTGACCTAACCAATGCTGGCCTTCAACAAATTAACCAGCTTGGGAGATTGAAACATCTTTCATTGGTTCGAAGCCAAGAGTTCCTAATTACCTACTTTCGTAGGGTGAATGATCTGGGATTACTTTTAATGGCTGACAAGTGTGCAAACATGGAGAGCATATGCCTTGGTGGCTTTTGTCGTGTCACAGACACTAGTTTCAAAACTATCTTGCATTCTTGCACTCGCTTATACAAGCTTAAGGTCACTCATGGGACTCATTTAACTGATCTAGTTTTTCATGATATTTCTGCAACGTCCCTTACTTTAACACATGTTAGCTTAAGACGGTGCAATCTGTTAACTAACCATGCTGTTTTGAGTTTGGCATCAAACAAGGAACTTAAAGTTCTTGACTTGAGAGATTGCAGGAGCCTTGGGGATGAAGCTCTCCAAGCCATTGGCACTCTTCCAAGACTGAAAGTTTTACTATTAGATGGCTCTGATATAACGGATGCAGGACTTTTGTACTTAAGACCATCTGTTATTAGCTCGCTGTATGCATTGTCGCTTCGAGGGTGCAAGAGACTTACAGATAAATGCATCACAGCTCTATTTAATGGCTGCTGTGTGCTGGAATTACGAGAACTGGATCTATCTAATCTTCCTAACCTTTCAGATAATGGAGTTCTGCTGCTGGCAAAAAGTCGGATTCCCTTTTTTGAACTCCGTATGCGACAGTGCCCTTTAATTGGTGATACTTCAGTCATGGCATTAGCTTCAATGCTGGTTGATGAGGCCAAACATGGAAGCAGTTTGCGTTTATTGGATCTTTTTAACTGTGGTGGCATTACACCGCTTTCATTTCGCTGGTTGAAGAAACCATATTTTCCAAGGCTCAAATGGTTGGGAGTGACCGGAAGTGTTAATAGAGACATGGTAGATGCTTTAGCCAGAAGCAGACCATTCTTACATGTGGCATGCCATGGTGAGGAGCTTGGGGCTGATCCCTATGGCACTTCAGATGGGTTATATACACATGATTATGATGACGTGGATGAATTTGAGAAGTGGCTTCTTGAAGCAGATATTGATAGTGACTATGAAGAGATGGGCGATGCTGAAAATAATGATGAAATGGTTATGTGA 1980 0.4505 MGLDHLPSAVVATIMTKLDIASICSLASTSSTFRSCARHILSFLPSFHLLDIAPSGELLRPLLPPNPYLTSLKLDCCRLDDSSIAFLLKPSLHDLCLHNCADFSGRLLSEIGTRCRHLRLAFISLPHLTVYYFLLLSIHVVCVVSFRSLYLGSVAEKRGRAIHITDLEELLGGCSQLEALILMFDVSLFLRHNFARVWASASEKLTSLEIGYISSVTVTELLSPNLGSHLPSNPVQPSILPSIQKLCLNVDYITDAMVGTISKGLILLTHLDLQDAPLIEPRITFDLTNAGLQQINQLGRLKHLSLVRSQEFLITYFRRVNDLGLLLMADKCANMESICLGGFCRVTDTSFKTILHSCTRLYKLKVTHGTHLTDLVFHDISATSLTLTHVSLRRCNLLTNHAVLSLASNKELKVLDLRDCRSLGDEALQAIGTLPRLKVLLLDGSDITDAGLLYLRPSVISSLYALSLRGCKRLTDKCITALFNGCCVLELRELDLSNLPNLSDNGVLLLAKSRIPFFELRMRQCPLIGDTSVMALASMLVDEAKHGSSLRLLDLFNCGGITPLSFRWLKKPYFPRLKWLGVTGSVNRDMVDALARSRPFLHVACHGEELGADPYGTSDGLYTHDYDDVDEFEKWLLEADIDSDYEEMGDAENNDEMVM 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00177 659 Gene3D Ribonuclease Inhibitor 45 456 IPR032675 -
Pumo3g00177 659 Pfam Leucine Rich repeat 409 431 IPR001611 GO:0005515
Pumo3g00177 659 SUPERFAMILY RNI-like 322 584 - -
Pumo3g00177 659 SMART LRR_CC_2 547 572 IPR006553 -
Pumo3g00177 659 SMART LRR_CC_2 89 114 IPR006553 -
Pumo3g00177 659 SMART LRR_CC_2 332 357 IPR006553 -
Pumo3g00177 659 SMART LRR_CC_2 410 434 IPR006553 -
Pumo3g00177 659 SMART LRR_CC_2 519 539 IPR006553 -
Pumo3g00177 659 SMART LRR_CC_2 384 409 IPR006553 -
Pumo3g00177 659 SMART LRR_CC_2 488 513 IPR006553 -
Pumo3g00177 659 SMART LRR_CC_2 460 485 IPR006553 -
Pumo3g00177 659 PANTHER UNCHARACTERIZED 379 563 - -
Pumo3g00177 659 FunFam F-box/LRR-repeat protein 10 isoform A 40 484 - -
Pumo3g00177 659 Gene3D Ribonuclease Inhibitor 457 597 IPR032675 -
Pumo3g00177 659 SUPERFAMILY F-box domain 3 39 IPR036047 GO:0005515
Pumo3g00177 659 Pfam F-box domain 4 40 IPR001810 GO:0005515
Pumo3g00177 659 SUPERFAMILY RNI-like 29 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00177 Pumo-Chr3 2252301 2255379 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00177 - - gmx:100789353 1184.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00177 3 2252301 2255379 Pumo3g00177 3 2252301 2255379 ECH