Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi3g0243 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g2863 . . . . . . . Mtr4g2352 . . . . . . . . Psa2g3446 . . . . . . . . . . . . . . . . . . . . Tpr3g2594 . . . Tsu02g02758 . . . . . . . . . . . . .
Vvi3g0244 . . . . Adu09g02874 . Aed1g1757 . Aev09g2721 . Ahy19g3050 . Aip09g03510 . . . . . Apr8g2661 . Arst9g03835 . . . . . . . . . Cca02g02754 . . . Dod06g0304 . . . . . . . . . . . . . . . . . Lal12g0276 . . . . . . . Lapu7g02513 . . . . . . . . . . . . . . Mal1g0197 Mepo4g04876 . . . . . . Mtr1g4333 . . Phco6g03059 . . . . . Pste4g00391 . . . . . Pumo3g00185 . Pvu7g0174 . Rops6g03431 . Seca8g08028 . Spst10g01564 . Ssu7g0206 . . . . Tpr1g0184 Trre1g06190 . . Tsu01g05001 Vian3g00171 . Vifa3g00163 . Vimu3g03685 . Viun7g03993 . . . Vra8g2651 .
Vvi3g0245 . . . . Adu09g02876 . Aed1g1754 . Aev09g2723 . Ahy19g3046 . Aip09g03508 . . . Amo19g3913 . Apr8g2663 . Arst9g03837 . . . . . . . . . Cca02g02756 . . . Dod06g0316 . . . . . . . . . . . . . . . Lal9g0173 . Lal12g0277 . . . . . . . . . . . . . . . . . . . . . . Mal1g0192 Mepo4g04879 . Mesa1g05290 . . . . Mtr1g4337 . . Phco6g03060 . . . . . . . . Pte9g01593 . . Pumo3g00183 . Pvu7g0172 . Rops6g03443 . Seca8g08029 . Spst10g01565 . Ssu7g0204 . Sto2g1103 . . Tpr1g0183 Trre1g06193 . . Tsu01g05003 Vian3g00169 . Vifa3g00162 . . . . . . . . .
Vvi3g0246 . . . . . . . . Aev09g2724 . Ahy19g3045 . Aip09g03505 . . . Amo19g3910 . . . . . . . . . . Bva14g02377 . . . . . . Dod06g0319 . . . . . . . . . . . . . . . . . Lal12g0278 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto10g0039 . . . . . . . . . . . . . . . . . .
Vvi3g0247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0249 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0250 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0251 . . . . Adu09g02877 . Aed1g1752 . . . . . . . . . . . Apr8g2664 . Arst9g03838 . . . . . . Bva14g02379 . . Cca02g02757 . . . . . . . . . . . . . . . . . . . . . Lal12g0279 . . . . . . . Lapu7g02515 . Lasa6g04799 . . . . . . . . . . . . Mal1g0190 Mepo4g04880 . Mesa1g05291 . . . . Mtr1g4338 Phac7g00258 . Phco6g03061 . . . Psa6g5336 . Pste4g00389 . . Pte9g01594 . . Pumo3g00179 . Pvu7g0168 . Rops6g03444 . Seca8g08030 . . . Ssu7g0201 . Sto2g1110 . . Tpr1g0182 Trre1g06203 . . Tsu01g05004 Vian3g00166 . Vifa3g00161 . Vimu3g03691 . Viun7g03998 . . . Vra8g2657 .
Vvi3g0252 . . . . . . Aed1g1751 . Aev09g2726 . Ahy19g3044 . Aip09g03504 . . . Amo19g3909 . Apr8g2668 . . . . . . . . Bva14g02380 . . Cca02g02758 . . . Dod06g0320 . . . . . . . . . . . . . . . . Lal13g0250 Lal12g0280 . . . . . . . . . . . . . . . . . . . . . . Mal1g0188 . . . . . . . Mtr1g4340 . . . . . . . Psa2g3439 . . . . . . . . . . . . . . . . Ssu7g0199 . Sto2g1116 Sto10g0038 . Tpr1g0181 . . . Tsu01g00161 . . . . . . . . . . Vra8g2658 .
   
Previous Page 305 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi3g0243 Chr3 2084983 2087028 -
Mal Mal7g2863 Chr7 91218957 91220300 -
Mtr Mtr4g2352 Chr4 37037312 37039583 -
Psa Psa2g3446 Chr2 382207168 382209494 -
Tpr Tpr3g2594 Chr3 25125167 25127333 -
Tsu Tsu02g02758 Chr02 29365771 29367627 -
Vvi Vvi3g0244 Chr3 2088700 2090248 +
Adu Adu09g02874 Chr09 116371041 116372945 +
Aed Aed1g1757 Chr1 15118462 15119773 -
Aev Aev09g2721 Chr09 27987592 27989211 +
Ahy Ahy19g3050 Chr19 153298777 153300801 -
Aip Aip09g03510 Chr09 141821811 141823710 -
Apr Apr8g2661 Chr8 36378439 36380104 +
Arst Arst9g03835 Chr9 114255587 114257768 +
Cca Cca02g02754 Chr02 49024072 49026099 +
Dod Dod06g0304 Chr06 4087477 4087866 +
Lal Lal12g0276 Chr12 1962932 1965639 +
Lapu Lapu7g02513 Chr7 41521222 41522670 +
Mal Mal1g0197 Chr1 2237770 2239215 -
Mepo Mepo4g04876 Chr4 58060882 58062409 +
Mtr Mtr1g4333 Chr1 55018418 55020139 +
Phco Phco6g03059 Chr6 51588906 51590361 +
Pste Pste4g00391 Chr4 3019412 3020746 -
Pumo Pumo3g00185 Chr3 2362700 2365714 -
Pvu Pvu7g0174 Chr7 1146417 1148084 -
Rops Rops6g03431 Chr6 58969622 58970182 +
Seca Seca8g08028 Chr8 177827203 177829195 +
Spst Spst10g01564 Chr10 16310220 16311685 +
Ssu Ssu7g0206 Chr7 3441991 3443411 -
Tpr Tpr1g0184 Chr1 1482188 1484074 -
Trre Trre1g06190 Chr1 65636561 65638018 +
Tsu Tsu01g05001 Chr01 56768523 56770212 +
Vian Vian3g00171 Chr3 1395114 1396569 -
Vifa Vifa3g00163 Chr3 12368802 12369587 -
Vimu Vimu3g03685 Chr3 49413446 49414902 +
Viun Viun7g03993 Chr7 39488665 39491686 +
Vra Vra8g2651 Chr8 44418331 44419918 +
Vvi Vvi3g0245 Chr3 2092848 2102461 -
Adu Adu09g02876 Chr09 116378850 116392616 -
Aed Aed1g1754 Chr1 15103113 15115340 +
Aev Aev09g2723 Chr09 27993132 28004448 -
Ahy Ahy19g3046 Chr19 153268293 153281430 +
Aip Aip09g03508 Chr09 141791623 141804387 +
Amo Amo19g3913 Chr19 154880300 154893363 +
Apr Apr8g2663 Chr8 36387361 36400001 -
Arst Arst9g03837 Chr9 114263458 114277330 -
Cca Cca02g02756 Chr02 49032026 49032789 -
Dod Dod06g0316 Chr06 4412046 4415026 -
Lal Lal9g0173 Chr9 1067576 1084224 -
Lal Lal12g0277 Chr12 1965050 1977628 -
Mal Mal1g0192 Chr1 2208855 2218569 +
Mepo Mepo4g04879 Chr4 58076224 58089096 -
Mesa Mesa1g05290 Chr1 80118750 80131023 -
Mtr Mtr1g4337 Chr1 55054643 55069166 -
Phco Phco6g03060 Chr6 51591891 51608118 -
Pte Pte9g01593 Chr9 36966501 36980438 -
Pumo Pumo3g00183 Chr3 2346804 2349331 +
Pvu Pvu7g0172 Chr7 1133907 1142193 +
Rops Rops6g03443 Chr6 59084380 59097993 -
Seca Seca8g08029 Chr8 177829218 177842513 -
Spst Spst10g01565 Chr10 16313685 16326299 -
Ssu Ssu7g0204 Chr7 3411280 3415617 +
Sto Sto2g1103 Chr2 9729908 9746567 -
Tpr Tpr1g0183 Chr1 1463351 1477287 +
Trre Trre1g06193 Chr1 65643802 65657651 -
Tsu Tsu01g05003 Chr01 56775551 56789654 -
Vian Vian3g00169 Chr3 1378823 1391550 +
Vifa Vifa3g00162 Chr3 12340671 12358814 -
Vvi Vvi3g0246 Chr3 2110199 2116339 -
Aev Aev09g2724 Chr09 28006134 28010471 -
Ahy Ahy19g3045 Chr19 153236256 153241019 +
Aip Aip09g03505 Chr09 141762429 141767098 +
Amo Amo19g3910 Chr19 154849186 154850376 +
Bva Bva14g02377 Chr14 20432192 20464859 -
Dod Dod06g0319 Chr06 4486125 4491641 -
Lal Lal12g0278 Chr12 1978807 1982886 -
Sto Sto10g0039 Chr10 348167 351399 +
Vvi Vvi3g0247 Chr3 2120837 2121573 -
Vvi Vvi3g0248 Chr3 2122136 2122801 -
Vvi Vvi3g0249 Chr3 2122899 2124044 -
Vvi Vvi3g0250 Chr3 2125404 2127705 -
Vvi Vvi3g0251 Chr3 2128406 2140641 -
Adu Adu09g02877 Chr09 116414710 116419363 -
Aed Aed1g1752 Chr1 15097488 15101750 +
Apr Apr8g2664 Chr8 36400895 36405005 -
Arst Arst9g03838 Chr9 114299422 114304015 -
Bva Bva14g02379 Chr14 20449384 20469068 -
Cca Cca02g02757 Chr02 49039134 49042733 -
Lal Lal12g0279 Chr12 1986294 1990257 -
Lapu Lapu7g02515 Chr7 41539176 41543965 -
Lasa Lasa6g04799 Chr6 670352684 670356109 -
Mal Mal1g0190 Chr1 2158492 2162965 +
Mepo Mepo4g04880 Chr4 58092352 58096699 -
Mesa Mesa1g05291 Chr1 80142789 80146741 -
Mtr Mtr1g4338 Chr1 55072883 55077521 -
Phac Phac7g00258 Chr7 1226315 1230566 +
Phco Phco6g03061 Chr6 51608334 51611975 -
Psa Psa6g5336 Chr6 467349428 467354046 +
Pste Pste4g00389 Chr4 2993570 2997586 +
Pte Pte9g01594 Chr9 36993203 36997337 -
Pumo Pumo3g00179 Chr3 2321721 2325996 +
Pvu Pvu7g0168 Chr7 1123146 1127246 +
Rops Rops6g03444 Chr6 59108236 59112856 -
Seca Seca8g08030 Chr8 177843160 177848114 -
Ssu Ssu7g0201 Chr7 3342293 3344086 +
Sto Sto2g1110 Chr2 9820928 9825714 -
Tpr Tpr1g0182 Chr1 1455790 1460954 +
Trre Trre1g06203 Chr1 65739637 65744362 -
Tsu Tsu01g05004 Chr01 56791615 56797026 -
Vian Vian3g00166 Chr3 1344612 1348346 +
Vifa Vifa3g00161 Chr3 12309807 12313375 +
Vimu Vimu3g03691 Chr3 49448840 49452566 -
Viun Viun7g03998 Chr7 39518276 39522348 -
Vra Vra8g2657 Chr8 44454272 44458720 -
Vvi Vvi3g0252 Chr3 2141490 2162023 -
Aed Aed1g1751 Chr1 15083760 15092633 +
Aev Aev09g2726 Chr09 28016270 28022616 -
Ahy Ahy19g3044 Chr19 153206782 153213937 +
Aip Aip09g03504 Chr09 141741058 141747581 +
Amo Amo19g3909 Chr19 154818912 154826304 +
Apr Apr8g2668 Chr8 36430168 36437863 -
Bva Bva14g02380 Chr14 20476408 20482711 -
Cca Cca02g02758 Chr02 49051443 49061049 -
Dod Dod06g0320 Chr06 4501281 4508525 -
Lal Lal13g0250 Chr13 1584361 1592106 -
Lal Lal12g0280 Chr12 1993122 2000126 -
Mal Mal1g0188 Chr1 2088078 2095542 +
Mtr Mtr1g4340 Chr1 55118002 55126223 -
Psa Psa2g3439 Chr2 381701965 381712072 -
Ssu Ssu7g0199 Chr7 3292516 3303907 +
Sto Sto2g1116 Chr2 9862910 9873174 -
Sto Sto10g0038 Chr10 339824 345838 +
Tpr Tpr1g0181 Chr1 1441786 1449144 +
Tsu Tsu01g00161 Chr01 1265292 1271455 +
Vra Vra8g2658 Chr8 44462594 44475305 -
Lal Lal9g0173 Chr9 1067576 1084224 -