Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03448 ATGGGATCTAATCGTGAAATGGGGAGTGTGGAGATGAGCCTGGATCACCTTCCTTACGCTCTGTTGGCCACCATCATGACCAAGCTCGACATCTCTTCCATCTGTTCATTGGCTTCCACTTCCTCCACCTTCCGCTCCTGTGCTCAACAAATTCTTTCCTTCCTCCCCAATTTCCACCTTCTCGAAATTGCGCCTTCTGGGGACTTGTTGAGACCGTTGCTGCCACCCAATCCTTACCTTAAGAGCCTCAAGGTTGATTGTGGTCACCTTGATGATTCTGCAATAGCCCTCTTGTTGAAACCCTCCTTGCACGAGCTTTGTCTTCACAATTGTGCTGATTTCAGTGGGAAATTGCTCTCTGAGATTGGGACCAGATGCAAGGACCTAAGGTCTCTCTACTTGGGCTCCGTAGCTGAAAAAAGAGGGAGGGCTATTCATATTTCTGATCTGGAGGAGTTACTTGGCGGCTGCTCTCAGTTGGAAGCACTGATTCTGATGTTTGATGTCTCTCTCTTTCTACGACATAACTTTGCTCGAGTTTGGGCTTCTGCATCAGAGAAACTTACTTCTCTCGAGATTGGCTATATTTCTTCTGTCACAGTTACCGAACTGCTTAGCCCAAAATTGGGATCCCATCAGTCCTTAAATCCTGTTCAGCCATCCATACTTCCAAGCATTCAGAAACTGTGCCTTTCAGTGGACTATGTAACTGATGCTATGGTTGGTACAATATCCAAGGGTCTCACCTTTTTGACCCATTTGGATCTTCGGGATGCACCACTGATCGAACCAAGAATTACATTTGACCTAACCAATGCTGGCCTTCAACAAATTAATCAACTTGGGAGATTGAAACACCTTTCATTGATCCGAAGCCAAGAGTTCCTAATTACCTACTTTCGAAGAGTAAATGATCTGGGTTTACTTCTGATGGCTGATAAGTGTGCAAACATGGAGAGCATATGCCTTGGTGGCTTTTGTCGTGTCACTGACACTGGCTTCAAAACTATCCTGCACTCTTGCTCTCGCTTATACAAGCTTAAGGTCACTCATGGAACTCACTTAACTGATCTAGTTTTTCATGATATCTCTGCAACATCTCTTACTTTAACACATGTGAGCTTAAGATGGTGCAATCTGTTAACCAACCATGCGGTTTTGAGTTTGGCATCAAACAAGGAACTTAAAGTTCTTGACTTGAGAGATTGCAGGAGCCTTGGGGATGAAGCTCTCCAGGCCATTGGCACTCTTCCAAAACTGAAAGTTTTACTATTAGATGGTTCTAATATAACTGATGCAGGACTTTCATTCTTACTGCCATCTGTTATTAAATCACTATATGCATTGTCTCTTCGAGGGTGCAAGAGACTTACAGATAAATGCATCACAATTCTATTTGATGGCTGTGGTACGCTGGAATTAAGAGAACTGGATCTATCTAATCTTCCCAACCTCTCGGACAATGGAGTTCTGCTGCTGGCAAAAAGTCGAATTCCCCTTTTCGAACTCCGAATGCGACAGTGTCCTCTGATTGGTGATACTTCAATCATGGCATTAGCTTCGATGCTGGTTGATGAGGACAGATGGCATGGAAGCAGTTTGCGCTTGTTGGATCTTTATAACTGTGGTGGCATTACACAGCTTTCATTTCGCTGGTTAAAGAAACCATATTTTCCAAGGCTCAAATGGTTGGGAGTGACTGGAAGTGTTAATAGAGATATGGTAGATGCTTTAGCTAGAAGTAGACCATTCTTACATGTGGCGTGCCATGGTGAGGAGCTTGGGGCTGACCCCTATGATATGTCAGATGGTTTATATACACATGATTATGATGAGGTAGATGAATTTGAGCAGTGGCTTCTTGAAGCTGATATTGATACAGATGATGAAGAATTAGGTGATGCTGAAAATAACGAAGAAATGGTTGTGTAA 1932 0.4348 MGSNREMGSVEMSLDHLPYALLATIMTKLDISSICSLASTSSTFRSCAQQILSFLPNFHLLEIAPSGDLLRPLLPPNPYLKSLKVDCGHLDDSAIALLLKPSLHELCLHNCADFSGKLLSEIGTRCKDLRSLYLGSVAEKRGRAIHISDLEELLGGCSQLEALILMFDVSLFLRHNFARVWASASEKLTSLEIGYISSVTVTELLSPKLGSHQSLNPVQPSILPSIQKLCLSVDYVTDAMVGTISKGLTFLTHLDLRDAPLIEPRITFDLTNAGLQQINQLGRLKHLSLIRSQEFLITYFRRVNDLGLLLMADKCANMESICLGGFCRVTDTGFKTILHSCSRLYKLKVTHGTHLTDLVFHDISATSLTLTHVSLRWCNLLTNHAVLSLASNKELKVLDLRDCRSLGDEALQAIGTLPKLKVLLLDGSNITDAGLSFLLPSVIKSLYALSLRGCKRLTDKCITILFDGCGTLELRELDLSNLPNLSDNGVLLLAKSRIPLFELRMRQCPLIGDTSIMALASMLVDEDRWHGSSLRLLDLYNCGGITQLSFRWLKKPYFPRLKWLGVTGSVNRDMVDALARSRPFLHVACHGEELGADPYDMSDGLYTHDYDEVDEFEQWLLEADIDTDDEELGDAENNEEMVV* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03448 643 SMART LRR_CC_2 393 417 IPR006553 -
Rops6g03448 643 SMART LRR_CC_2 248 281 IPR006553 -
Rops6g03448 643 SMART LRR_CC_2 531 556 IPR006553 -
Rops6g03448 643 SMART LRR_CC_2 367 392 IPR006553 -
Rops6g03448 643 SMART LRR_CC_2 497 522 IPR006553 -
Rops6g03448 643 SMART LRR_CC_2 443 468 IPR006553 -
Rops6g03448 643 SMART LRR_CC_2 315 340 IPR006553 -
Rops6g03448 643 SMART LRR_CC_2 471 496 IPR006553 -
Rops6g03448 643 SMART LRR_CC_2 100 125 IPR006553 -
Rops6g03448 643 SUPERFAMILY RNI-like 66 290 - -
Rops6g03448 643 Gene3D Ribonuclease Inhibitor 395 604 IPR032675 -
Rops6g03448 643 Pfam Leucine Rich repeat 392 414 IPR001611 GO:0005515
Rops6g03448 643 Pfam F-box domain 15 50 IPR001810 GO:0005515
Rops6g03448 643 SUPERFAMILY RNI-like 303 568 - -
Rops6g03448 643 FunFam F-box/LRR-repeat protein 10 isoform A 51 467 - -
Rops6g03448 643 Gene3D Ribonuclease Inhibitor 266 379 IPR032675 -
Rops6g03448 643 Gene3D Ribonuclease Inhibitor 5 212 IPR032675 -
Rops6g03448 643 SUPERFAMILY F-box domain 10 50 IPR036047 GO:0005515
Rops6g03448 643 PANTHER UNCHARACTERIZED 16 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03448 Rops-Chr6 59187342 59190502 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03448 - - pvu:PHAVU_007G016400g 1115.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03448 6 59187342 59190502 Rops6g03448 6 59187342 59190502 ECH