Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00155 ATGGCGACTCCGGCGGAGCCTCGGCTAGACCAACTCCCTCACGCTCTACTCTCCACCATCATGACCAAACTAGACATCTCTTCCATCTGTTCACTATCCTCCACTTGCTCCACCTTCCGCTCATGCGCCAAACACATCCTCTCCTTCCTCCCCAACTTCCATCTCATCGATATTGCGCCTTCTGGTGACCTGCTCACGCCGTTGCTCCCGCCGAATCCGTACATGAAGAGCCTTAAAGTTGATTGTGACCGGCTCGATGATTCCGCGATTTCGTATTTGGTGAAACCGTCGTTGCACGAGCTTTCTTTGTTTAATTGTTCTGATTTTAGTGGGAAGCTTCTCTCTCAGATCGGTTCTCAATGCAAGGATCTAAGGTCTCTTTACTTGGGTTCGGTTGCTGAGAAAAGAGGGAGGGCAATTCACATGTCTGATCTAGAGGAATTACTCACGGGTTGCTCCCAGTTGGAAGTTTTGATTCTGATGTTTGATGTCTCTCTCTTTCTACGTCAAAACTTAGCTCGAGTTTGGGCTTCTGCGTCTGAAAAACTTATTTCTCTTGAGATTGGATACATTTCTTCAGTAACAGTGATTGAACTGTTCAGCTCAAATTCGGGATCTCATCAACCACCTAATCCTATTCAACCATCAATACTTCCGGGAATTCTAAAATTATGTCTTTCGGTGAACTATATAACGGATGCTATGGTTGCCACAATATCCACAGGTCTCATCTTTTTGACTCATTTGGATCTCCGTGATGCACCATTTGTTGAACCAAGAATTACATTTGATCTAACCAACGCCGGTCTTCAGCAAATTAATCAACTTGGGAGATTGAAACATCTTTCATTGATCCGAAGCCAAGAGTTCATAATTTGTTACTTTCGAAGAGTAAACGATCTAGGATTACTTTTAATGGCTGACAAGTGCACAAACATGGAGAGTATATGTCTTGGCGGTTTTTGTCGTGTCACAGACACCGGAATCAAAACTATGCTGCATTCTTGCTCTCGTCTATATAAACTTAAGGTTACTCACGGGACTCAATTAACTGATCTAGTTTTTCATGATATCTCTGCAACATCCCTTACCTTAACACATGTGAGCTTAAGATGGTGCAAGCTCTTAACCAATCATGCAGTTCTTAGTTTGACATCAAACAGGGAACTTAAAGTTCTCGACTTGAGAGATTGCAGGAGCCTTGGGGATGAAGCTCTCCGAGCCATTGGTGTACTTCTGAAACTGAAAATTTTACTAATAGATGGCTCTGATATAACTGATGCTGGACTTTCATACTTACGACCAACTGTTATTAATTCACTATATGCTTTGTCTCTTCGAGGGTGTAAGAGACTCACCGATAAATGCATAACAATTTTATTTGATGGTTGTGGCAAGCTGGAATTAAGAGACTTGGATCTATCCAATCTTCCTAATCTCTCAGATAATGGAGTTTTGCAGCTAGCAAAAAGTCGTATTCCATTTTTGGATCTTCGAATGCGACAATGCCCTTTAATTGGTGATACCTCGATCATGGCGTTAGCTTCAATGATGACAGATGATGCTGGATGGCATGAAAGTGGTTTGCGCTTGTTGGATTTATATAACTGTGGTGGCATTACACCACTTGCTTTTCGTTGGTTAAAGAAACCGTATTTTCCAAGGCTTAAATGGTTAGGAGTGACTGGAAGTGTTAATAGAGACATGGTAGATGCTTTAGCTAGAAGTAGACCTTTCTTGTATGTAGCATGCGACGGTGAGGAGCTTGGGCCTGACCCATGTGATATGTCTGATGGTTTATATACACATGATTATGATGAGGTGGATGAATTTGAACAGTGGCTTCTTGAAGCTGATGTTAATGAAGATGATGAAGAAATGGAAGATGATGAAAATGTTGAAGAGTTGATTATGTAG 1917 0.4184 MATPAEPRLDQLPHALLSTIMTKLDISSICSLSSTCSTFRSCAKHILSFLPNFHLIDIAPSGDLLTPLLPPNPYMKSLKVDCDRLDDSAISYLVKPSLHELSLFNCSDFSGKLLSQIGSQCKDLRSLYLGSVAEKRGRAIHMSDLEELLTGCSQLEVLILMFDVSLFLRQNLARVWASASEKLISLEIGYISSVTVIELFSSNSGSHQPPNPIQPSILPGILKLCLSVNYITDAMVATISTGLIFLTHLDLRDAPFVEPRITFDLTNAGLQQINQLGRLKHLSLIRSQEFIICYFRRVNDLGLLLMADKCTNMESICLGGFCRVTDTGIKTMLHSCSRLYKLKVTHGTQLTDLVFHDISATSLTLTHVSLRWCKLLTNHAVLSLTSNRELKVLDLRDCRSLGDEALRAIGVLLKLKILLIDGSDITDAGLSYLRPTVINSLYALSLRGCKRLTDKCITILFDGCGKLELRDLDLSNLPNLSDNGVLQLAKSRIPFLDLRMRQCPLIGDTSIMALASMMTDDAGWHESGLRLLDLYNCGGITPLAFRWLKKPYFPRLKWLGVTGSVNRDMVDALARSRPFLYVACDGEELGPDPCDMSDGLYTHDYDEVDEFEQWLLEADVNEDDEEMEDDENVEELIM 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00155 638 SUPERFAMILY F-box domain 5 45 IPR036047 GO:0005515
Vifa3g00155 638 SUPERFAMILY RNI-like 50 284 - -
Vifa3g00155 638 Gene3D Ribonuclease Inhibitor 22 413 IPR032675 -
Vifa3g00155 638 Gene3D Ribonuclease Inhibitor 414 588 IPR032675 -
Vifa3g00155 638 Pfam Leucine Rich repeat 386 409 IPR001611 GO:0005515
Vifa3g00155 638 FunFam F-box/LRR-repeat protein 10 isoform A 46 462 - -
Vifa3g00155 638 ProSiteProfiles F-box domain profile. 6 53 IPR001810 GO:0005515
Vifa3g00155 638 SMART fbox_2 12 52 IPR001810 GO:0005515
Vifa3g00155 638 PANTHER UNCHARACTERIZED 11 408 - -
Vifa3g00155 638 SUPERFAMILY RNI-like 218 560 - -
Vifa3g00155 638 SMART LRR_CC_2 362 387 IPR006553 -
Vifa3g00155 638 SMART LRR_CC_2 95 120 IPR006553 -
Vifa3g00155 638 SMART LRR_CC_2 438 463 IPR006553 -
Vifa3g00155 638 SMART LRR_CC_2 493 517 IPR006553 -
Vifa3g00155 638 SMART LRR_CC_2 466 491 IPR006553 -
Vifa3g00155 638 SMART LRR_CC_2 526 551 IPR006553 -
Vifa3g00155 638 SMART LRR_CC_2 310 335 IPR006553 -
Vifa3g00155 638 SMART LRR_CC_2 388 412 IPR006553 -
Vifa3g00155 638 Pfam F-box domain 10 46 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00155 Vifa-Chr3 11731827 11735271 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00155 - - pvu:PHAVU_007G016400g 1012.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00155 3 11731827 11735271 Vifa3g00155 3 11731827 11735271 ECH