Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01743 ATGGCTCCTTTCGCAATTGCAACATTGGCCACTTCTCACACCTGCATGATCCCAAAGCCTGCGAATTTGAAAGTTCCAATTCGCTGCTCCGCTGCTGCTTCTTCTCCTTCTTCGATTTCCACTCGATCAAAAGCCTCTGACTTTGATTTGAGGACATATTGGGCTTCCCTAATGGTGCAGATCAATCAGAAGCTCGACGAAGCCATTCCAGTTCAGTTTCCTCCGCAGATATATGAAGCTATGCGGTATTCAGTCCTTGCCAAAGGTGTCAAACGAGCCCCACCTGTTATGTGCATCTCTGCATGTGAACTCTTTGGGGGCAGCCGCCTTGCCGCCTTCCCTACTGCCTGCGCCCTTGAAATGGTTCATGCAGCTTCATTGATACATGATGATCTTCCCTGCATGGATGACTCCCCATCACGCCGTGGGAAACCTTCAAATCATACCATCTATGGTGTTGACATGGCAATTCTTGCTGGTGATGCGCTTTTTCCCCTTGGATTTCGTCACATTGTTTCACAGACTCCGTCGGACCTTGTGCCTGAGCCCAATCTTCTTCGTGTTATTGCTGAGATGGCTCGCTCTGTGGGCTCCACTGGTATGGCTGCAGGGCAGTTCCTAGATCTTGAAGGAGGATCCAATGCAGTTGAATTTATACAAGAAAAAAAGTTTGGTGAAATGGGAGAGTGTTCTGCAGTGTGTGGAGGATTGTTGGCTGGAGCTGAAGATAATGAGATAGAGAGACTGAGGAGGTACGGGAGAGCTGTTGGGCTATTGTATGCAGTTGTGGATGATATTCTGGAAGAGAGGTTGAAAGCTGAGGGAGGTGTTGACAGGGAAAACAAGGGCAAGAGTTATGCAGAGGTTAATGGAGTAGAAAAGGCAATAGAAAAAGCTGAAGAACTCAGAGAAAAGGCTAAGGAAGAATTGGATGGATTTGAGAAGTACGGGGAGCGAGTCTTTCCTCTCTACAGTTTTGTGGATTATGCATTTGATAGAAGCTTCAATGTTGATGATGCCAGTGGATAA 1029 0.4713 MAPFAIATLATSHTCMIPKPANLKVPIRCSAAASSPSSISTRSKASDFDLRTYWASLMVQINQKLDEAIPVQFPPQIYEAMRYSVLAKGVKRAPPVMCISACELFGGSRLAAFPTACALEMVHAASLIHDDLPCMDDSPSRRGKPSNHTIYGVDMAILAGDALFPLGFRHIVSQTPSDLVPEPNLLRVIAEMARSVGSTGMAAGQFLDLEGGSNAVEFIQEKKFGEMGECSAVCGGLLAGAEDNEIERLRRYGRAVGLLYAVVDDILEERLKAEGGVDRENKGKSYAEVNGVEKAIEKAEELREKAKEELDGFEKYGERVFPLYSFVDYAFDRSFNVDDASG 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01743 342 Gene3D Farnesyl Diphosphate Synthase 47 342 IPR008949 -
Vimu11g01743 342 Coils Coil 289 316 - -
Vimu11g01743 342 Pfam Polyprenyl synthetase 76 268 IPR000092 GO:0008299
Vimu11g01743 342 SFLD Isoprenoid Synthase Type I 78 321 - -
Vimu11g01743 342 CDD Trans_IPPS_HT 74 333 IPR000092 GO:0008299
Vimu11g01743 342 SUPERFAMILY Terpenoid synthases 52 313 IPR008949 -
Vimu11g01743 342 FunFam Geranylgeranyl diphosphate synthase 47 335 - -
Vimu11g01743 342 ProSitePatterns Polyprenyl synthases signature 1. 127 143 IPR033749 -
Vimu11g01743 342 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 21 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01743 Vimu-Chr11 23140067 23141557 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01743 K13789 - gmx:100788186 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01743 11 23140067 23141557 Vimu11g01743 11 23140067 23141557 ECH