Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0254 ATGGACTATACGAATGTTTTCACAACTGACGCAATTCACCCTAGTAGAGAAGCTTTGATCGAATGGGTCCGGGAGACCGGTAAGAGGAATGGAATGGTGATTATAATTCAAAGAGCTGATATAGGTGCTACAAATAGGAGCAGGCCTAGAATCACATTTGTTTGTGAAAGAAGTGGAGCTTATAGGCATACGGGGATGGATAAGGGGGAGGAAGGAAAAAAGAAAAGGAAGAGAAAGGCCACAGGAACCAAAAAATGTGGCTGCCCTTTCTCTTTGAGGGGTATCAAGTTGCCACTAGCCGATGAATGGACGTTGGTAGTTAAATGTGGAACTCATAACCATCCAGGAGGTCAGCATGTTGAGGGACACTCCTTTGCTGGCCGGTTAAGTATGGAAGAAATCGGTATATTGATTGACCTGTCAAAGAGTCAGATGAAGCCAAAGGAAATCTTGAATACCCTAAAGGAGAGAGATGGGCTTAATTGCACAACAATAAAGGGTATATACAATGCAAGACATAAACATAAACTAAACGAAAATGCTGGTGGGTCACTGATGCAACAACTCATGAACAAGTTAATGGAGTTTAAGTACATTGAGTGGCATAGGAATGATGAGCATAATAACTGTGTTAGGGACTTGATGTTTGCACATCCTTCATCCCTTGAGTTGTTACGTGCCTTCCCAAGGGTCTTGATCATGGATTGTACATACAGAACCAACAAATACCAATTACCTTTGCTTGAGGTGGTTGGTGTTACCTCGACTGAGAAGACATTCTCTGTTGCTTTTGCCTATCTTGGGTCTGAAAGAGAGGAGGCCCACACTTGGGCATTGGAGAGATTGAGGAGTATGATTGATGATGCCATGCTTCCACGAGTAGTTATGACTGATAGGGAACCATCCCTTATGAATGCCCTCCAAAAGGTGTTCCCAATGGCTTCAAATCTCCTATGCAGGTGGCACATTTCAACAAACATCCTCGCAAATTGCAAAATTTTTTTTGAGTCAAAGTCAAGGTTGGACGCTTTTATTTCCATGTGGAACATAGTAGTGCTTGCTGAAACCGAAGATGAGTATGCAAATCGCCTTAACCAGTTGGAGTCACACTTTCATAGATATATACAGGCCATTAATTACTGCAAGGAACAATGGTTGTTGCCGTATAAGGAGAAGTTTGTGGCAGTTTGGACGAACAAAGTCATGCACTTTGGTAACACCACAGTGAATAGGGCAGAGTCAACACGTGCAAAACTAAAGAGGCAGCTAGGCTTGTCTCGGGGTGATATTGAGAGCTCATGGCCAAAAATCCATTCTCTGCTCGAGTTGCAACACATAGATATAAAAACATCATTTGAGATTAGTTTAACAAATGTGCAACACAACTTCAAAGATCCATTATATGGTGAGGTAAGGGGAAGTGTTTCGAAGTCTGCATTGTGCATATTGGTAGATGAAGCAAATAGATCTGAGAGTATTGGAGTGGATGCCTCTGCTTGTGGGTGTGTGTACAGTCGAACTCATGGGTTACCCTGTGCCCATGAGATATCTTCATATAAGATTAGAGGTCAACCCATCCCTTTGGCATGCGTAGACCCCCACTGGAGAAAACTTGATCTAGTATCAGTTAGCGGGAAAAAAGTGCAGGATGTGAGTTTTACCACTGCCATGGAACTCTTCTACAAACGATTTATGGATGCTGATGACATTGGCAAGCAGCAGTTGGTGATGAAGTTGATGGAGTTAGTTAATTCAACTTCCACTTCCCTTGTTGCACCAAAAGAAAATGTGAAGACCAAAGAGGGATGCACATCTTCATTTCCAGAGGGCTTGCAGCCATACATCATGCATGTGAAGGATGTAGCTGCAGATGGTAATTGTGGCTTTCGAGTTATAGCATCTGCTATGGGCATGGGTGAGGAAGGGTGGCCTCAGGTGAGGAGAGACATGCTGTTTGAGTTACGCACATACTGGGCTGAGTATGCCCAGTTGTTTCGGGATCCAATACGGGTTGATGAGCTTATTCATGTGCTTGAACACTTTCAGAGTCCTGCTGATTATGATAGATGGATGACTATGCCTGATATGGGGCACATTATAGCCTCCAGATACAATGTTGTCCTAGTTTATATTTCAATGCAGTTGTGCCTTACCTTCCTCCCACTCAGGTCAGCGCCAACACCACTACCTATGCGTAGGGTTTTGTCAATAGGTTTCATCAATGATAATCACTTTGTGGAGGTAATGTTTATAATTTAG 2259 0.4303 MDYTNVFTTDAIHPSREALIEWVRETGKRNGMVIIIQRADIGATNRSRPRITFVCERSGAYRHTGMDKGEEGKKKRKRKATGTKKCGCPFSLRGIKLPLADEWTLVVKCGTHNHPGGQHVEGHSFAGRLSMEEIGILIDLSKSQMKPKEILNTLKERDGLNCTTIKGIYNARHKHKLNENAGGSLMQQLMNKLMEFKYIEWHRNDEHNNCVRDLMFAHPSSLELLRAFPRVLIMDCTYRTNKYQLPLLEVVGVTSTEKTFSVAFAYLGSEREEAHTWALERLRSMIDDAMLPRVVMTDREPSLMNALQKVFPMASNLLCRWHISTNILANCKIFFESKSRLDAFISMWNIVVLAETEDEYANRLNQLESHFHRYIQAINYCKEQWLLPYKEKFVAVWTNKVMHFGNTTVNRAESTRAKLKRQLGLSRGDIESSWPKIHSLLELQHIDIKTSFEISLTNVQHNFKDPLYGEVRGSVSKSALCILVDEANRSESIGVDASACGCVYSRTHGLPCAHEISSYKIRGQPIPLACVDPHWRKLDLVSVSGKKVQDVSFTTAMELFYKRFMDADDIGKQQLVMKLMELVNSTSTSLVAPKENVKTKEGCTSSFPEGLQPYIMHVKDVAADGNCGFRVIASAMGMGEEGWPQVRRDMLFELRTYWAEYAQLFRDPIRVDELIHVLEHFQSPADYDRWMTMPDMGHIIASRYNVVLVYISMQLCLTFLPLRSAPTPLPMRRVLSIGFINDNHFVEVMFII* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0254 752 ProSiteProfiles OTU domain profile. 616 751 IPR003323 -
Vvi3g0254 752 CDD OTU 617 745 - -
Vvi3g0254 752 Pfam MULE transposase domain 231 326 IPR018289 -
Vvi3g0254 752 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 11 537 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0254 Vvi-Chr3 2195235 2197575 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0254 - - vvi:104878194 1503.8