Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00327 ATGGCGTCGACAGCACGATCTTCGTCCACGCTCCTCAAGCGATTCCTGGCCACGCGACTCAACCAGTCCCGCTCCGTTACCTACATGCCCCGTCCCGGAGACGGCGCCCCGCGCGCCGTCACACTGATTCCCGGCGATGGGATCGGTCCTCTGGTCACCGGTGCCGTTGAGCAGGTGATGGAGGCGATACACGCGCCGGTGTACTTCGAGAAGTTCGAGGTCCACGGCGACATGAAGGCGGTGCCGCCGGCGGTGATTGAGTCGATCCGGAAGAACAAGGTGTGCCTCAAGGGAGGACTAGCGACGCCGATGGGCGGCGGTGTGAGCTCACTGAACGTGCAGCTGAGGAAGGAGCTCGACCTCTACGCTTCACTCGTCAACTGTTTCAACCTCCCTGGTATCACCACGCGCCACAACAACGTCGACATCGTCGTAATCAGGGAGAACACCGAAGGCGAGTACTCCGGCCTCGAGCACGAGGTCGTCCCCGGCGTCGTTGAAAGCCTCAAGGTAATAACGAAGTTCTGTTCGGAGCGCATTGCTAAATATGCTTTCGAGTATGCTTACCTTAATAACAGAAAGAAAGTGACTGCTGTGCACAAAGCAAACATTATGAAGCTTGCAGATGGTTTATTCTTGGAATCTTGTCGGGAGGTTGCAACAAAGTATCCCGGAATCAAGTATAACGAAATTATTGTAGATAACTGCTGCATGCAGCTTGTATCAAAGCCTGAGCAGTTTGATGTCATGGTGACCCCCAATCTGTATGGAAATCTCGTTGCAAATACAGCAGCAGGTATTGCTGGAGGTACTGGTGTCATGCCAGGAGGAAATGTTGGGGCTGAGCATGCTGTGTTTGAGCAAGGTGCTTCAGCTGGGAATGTTGGCAGTGGGAAGGAAGTGGAAGAGAAGAAAGCCAACCCTGTGGCGCTGCTTCTTTCGTCAGCCATGATGCTGAGACACCTTCAGTTTCCTGCATTTGCTGACAGACTGGAAACTGCTGTGAAACGTGTAATTCTAGAGGGTCAATGCCGGACACATGACCTTGGAGGGACAAGCACCACTCAAGAGGTTGTTGATGCTGTGTTAGATGCTTTAAACTGA 1104 0.5335 MASTARSSSTLLKRFLATRLNQSRSVTYMPRPGDGAPRAVTLIPGDGIGPLVTGAVEQVMEAIHAPVYFEKFEVHGDMKAVPPAVIESIRKNKVCLKGGLATPMGGGVSSLNVQLRKELDLYASLVNCFNLPGITTRHNNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAEHAVFEQGASAGNVGSGKEVEEKKANPVALLLSSAMMLRHLQFPAFADRLETAVKRVILEGQCRTHDLGGTSTTQEVVDAVLDALN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00327 367 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 39 366 - -
Aip05g00327 367 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 22 364 - -
Aip05g00327 367 SMART Iso_dh_2 39 362 IPR024084 -
Aip05g00327 367 Gene3D Isopropylmalate Dehydrogenase 26 365 - -
Aip05g00327 367 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 22 364 - -
Aip05g00327 367 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 36 365 IPR004434 GO:0006099
Aip05g00327 367 Pfam Isocitrate/isopropylmalate dehydrogenase 40 362 IPR024084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00327 Aip-Chr5 3682230 3686291 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00327 K00030 - gmx:100778831 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00327 05 3682230 3686291 Aip05g00327 05 3682230 3686291 ECH
Aip05g00327 05 3682230 3686291 Aip10g00090 10 842245 845971 PCT