Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05554 ATGGCTCCTTTTGCATTTGCAACATTGCCCTCTTCACACATCTGCCACCTCCGAAAACCTCCAAACCTTATGCTTCCAATTCGCTGCTCCGCAGCTGCTTCATCTCCTTCCTCTGTTTCCACTCGATCAAAAGCTGCTCACTTTGATTTGAAGACATATTGGACTTCCCTAATGGTGCAGATCAATCAGAAACTCGATGAAGCTATTCCAGTTCAGTTCCCAGCACAGATATATGAAGCTATGAGGTATTCAGTCCTCGCAAAAGGTGCCAAGCGAGCCCCGCCTGTTATGTGCATCTCTGCTTATGAACTCTTTGGGGGAAGCCGCCTTGCTGCCTTCCCCACTGCCTGTGCTCTTGAAATGGTTCATGCGGCTTCATTGATACATGATGATCTTCCCTGCATGGATGACTCCCCCTCACGTCGTGGCCAGCCCTCAAACCACACTGTCCATGGTGTTGACATGGCAATTCTTGCCGGTGATGCACTCTTTCCCCTTGGATTTCAACACATTGTTTCACATACTCCCTCTGACCTCGTGCCTGAACCCCACCTCCTTCGTGTGATTGCTGAGATAGCCCGCTCTGTAGGCTCCACTGGAATGGCTGCAGGGCAATTTCTGGACCTTGAAGGGGGACCCAATGCAGTTGGATTTATACAAGAAAAGAAGTTTGGTGAAATGGGGGAGTGTTCTGCAGTGTGTGGAGGATTGTTGGCTGGTGCTGAAGATGATGAGATAGAGAGATTGAGGAGGTATGGGAGAGCTGTTGGGCTATTGTATGCAGTGGTGGATGATATTTTGGAAGAGAGATTGAAACCTGAGGGAGCTAATGAAAGGAAAAACAAGGGGAAGAGTTATGTTGGGGTTTATGGGGTTGAGAAAGCAACAGAGATGGCTGAAGAGCTTAGAACAAAGGCTAAGGAAGAATTGGATGGATTTGAGAAATATGGGGAGCGAGTCTTTCCTCTCTACAGTTTTGTGGATTATGCTATTGATAGAAGTTTCAGTGTTGTTGACGCCAGTGTATGA 1029 0.4762 MAPFAFATLPSSHICHLRKPPNLMLPIRCSAAASSPSSVSTRSKAAHFDLKTYWTSLMVQINQKLDEAIPVQFPAQIYEAMRYSVLAKGAKRAPPVMCISAYELFGGSRLAAFPTACALEMVHAASLIHDDLPCMDDSPSRRGQPSNHTVHGVDMAILAGDALFPLGFQHIVSHTPSDLVPEPHLLRVIAEIARSVGSTGMAAGQFLDLEGGPNAVGFIQEKKFGEMGECSAVCGGLLAGAEDDEIERLRRYGRAVGLLYAVVDDILEERLKPEGANERKNKGKSYVGVYGVEKATEMAEELRTKAKEELDGFEKYGERVFPLYSFVDYAIDRSFSVVDASV. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05554 342 Gene3D Farnesyl Diphosphate Synthase 47 342 IPR008949 -
Seca12g05554 342 SUPERFAMILY Terpenoid synthases 51 313 IPR008949 -
Seca12g05554 342 CDD Trans_IPPS_HT 74 333 IPR000092 GO:0008299
Seca12g05554 342 ProSitePatterns Polyprenyl synthases signature 1. 127 143 IPR033749 -
Seca12g05554 342 Pfam Polyprenyl synthetase 76 279 IPR000092 GO:0008299
Seca12g05554 342 SFLD Isoprenoid Synthase Type I 78 329 - -
Seca12g05554 342 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 9 333 - -
Seca12g05554 342 FunFam Geranylgeranyl diphosphate synthase 47 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05554 Seca-Chr12 146666797 146669705 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05554 K13789 - gmx:100788186 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05554 12 146666797 146669705 Seca12g05554 12 146666797 146669705 ECH