Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3908 ATGGAAATGGAGGTGAGCCTGGATGAGCTTCCTTCGGCTCTTCTGGCCACCATAATGACCAAGCTCGACATCGCTTCAATCTGCTCCTTGGCTTCAACTTCCTCCACCTTCCGCTCCTGCGCCAAACACATCCTCTCTTTCCTTCCCACTTTCCATCTCTTGGATATTGCGCCTTCTGGGGAGTTGCTGAGGCCATTGCTACCACCAAATCGGAGCCTGAAGAGCCTCAAGGTTGATTGTGGTCGCCTTGACGATTCTGCTATACCTGTTCTGCTGAAACCCTCGTTGCATGAACTTTGCCTGCATAACTGTGCTGATTTTAGTGGCAAGCTTCTTTCTGAGATTGGGACCCGTTGCAAGGATCTAAGGTCTCTCTACTTGGGTTCGGTAGCAGAAAAAAGAGGGAGGGCCATTCATATTAATGATCTGGAGGAGTTACTCAGCAGCTGCTCCCAGTTGGAAGCACTTATCCTGATGTTTGATGTCTCTCTCTTTCTTCGCCACAACTTTGCTCGAGTTTGGGCTTCTGCCTCTGAGAAACTCACTTCTCTTGAAATTGGTTACATTTCTGCAGTTACAGTGACTGAACTGCTTAGCCCAAATTTGGGGTCCCATCAGTCCTTAAATCCTGTTCAATCATCAGTATTGCCAAGAATTCAGAAACTATGCCTTTCAGTAGACTATATAACCGATGCTATGGTTGGTACTATATCCAAAGGTCTCCCCTTGTTGACTCATTTGGATCTTCGAGATGCACCACTTATTGAACCAAGAGTTACTTTTGATCTAACCAATGCTGGCCTTCAACAAATTAATCAGCTTGGGAGATTGAAACATCTTTCATTGGTTCGAAGCCAAGAATTCCTGATTACTTACTTTCGAAGAGTAAATGATCTAGGATTACTTCTAATGGCTGACAAATGTGCAAACATGGAGAGCATATGTCTTGGTGGCTTCTGTCGTGTCACAGATACCGGTTTCAAAACTATCCTACATTCGTGCTCACGCTTATGCAAGTTTAAGGTCACTTATGGGACTCATTTAACTGATCTAGTTTTTCATGATATTTCTGCAACGTCCCTTACCTTGACACACGTGAGCTTGAGGTGGTGCAATCTGTTAACAAACCATGCAGTATATAGTTTGGCATCAAACAAGGAGCTTAAAGCCCTTGACTTGAGAGATTGTAGAAGCCTGGGGGATGAAGCTCTACGGGCCATTGGCTCTCTTCCAAAACTGAAAATGTTACTATTAGATGGGTCTGATATAACTGATGCTGGACTTTCTTACTTAAGACCATCTGTTATCAATTCGCTGTTCGTGTTGTCTCTCCGAGGGTGCAAGAGACTCACAGACAAATGCATCACGGTCCTATTTGATGGCTGTGGTATGCTGGAATTGCGAGAACTGGACCTATCCAATCTTCCTAGCCTATCAGATAATGGAGTTTTGCTGCTGGCAAAGAGTCGGATTCGCTTTTCCGAACTCCGGATGCGGCAGTGCCCTCTGATTGGCGATACTTCAATCATGGCATTAGCTTCAATGCAGGTTGATGAGGCTGGATGGCATGGAAGCAGTCTGCGCTTATTGGATCTTTACAACTGTGGTGGCATTACACCACTAGCATTTCGGTGGTTAAAGAAACCGTATTTCCCAAGGCTTAAATGGTTGGGAGTGACTGGAAGCGTTAATAGGGACATGGTAGATGCTTTAGCTACAAGTAGACCTTTCTTGCATGTAGCATGCCATGGTGAGGAGCTTGGGGCTGATCCTTATGATATCTCAGATGGTTTATACACCCATGATTACGATGAGGTGGACGAATTTGAGCAGTGGCTTCTTGAAGCTGATGTCAATAGCGAGGATGAAGAAATGGGTGATGCTGAAAATAATGAAGTACTGGCTGTGTAA 1911 0.449 MEMEVSLDELPSALLATIMTKLDIASICSLASTSSTFRSCAKHILSFLPTFHLLDIAPSGELLRPLLPPNRSLKSLKVDCGRLDDSAIPVLLKPSLHELCLHNCADFSGKLLSEIGTRCKDLRSLYLGSVAEKRGRAIHINDLEELLSSCSQLEALILMFDVSLFLRHNFARVWASASEKLTSLEIGYISAVTVTELLSPNLGSHQSLNPVQSSVLPRIQKLCLSVDYITDAMVGTISKGLPLLTHLDLRDAPLIEPRVTFDLTNAGLQQINQLGRLKHLSLVRSQEFLITYFRRVNDLGLLLMADKCANMESICLGGFCRVTDTGFKTILHSCSRLCKFKVTYGTHLTDLVFHDISATSLTLTHVSLRWCNLLTNHAVYSLASNKELKALDLRDCRSLGDEALRAIGSLPKLKMLLLDGSDITDAGLSYLRPSVINSLFVLSLRGCKRLTDKCITVLFDGCGMLELRELDLSNLPSLSDNGVLLLAKSRIRFSELRMRQCPLIGDTSIMALASMQVDEAGWHGSSLRLLDLYNCGGITPLAFRWLKKPYFPRLKWLGVTGSVNRDMVDALATSRPFLHVACHGEELGADPYDISDGLYTHDYDEVDEFEQWLLEADVNSEDEEMGDAENNEVLAV* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3908 636 Gene3D Ribonuclease Inhibitor 2 202 IPR032675 -
Amo19g3908 636 SMART LRR_CC_2 360 385 IPR006553 -
Amo19g3908 636 SMART LRR_CC_2 241 274 IPR006553 -
Amo19g3908 636 SMART LRR_CC_2 464 489 IPR006553 -
Amo19g3908 636 SMART LRR_CC_2 386 410 IPR006553 -
Amo19g3908 636 SMART LRR_CC_2 93 118 IPR006553 -
Amo19g3908 636 SMART LRR_CC_2 490 515 IPR006553 -
Amo19g3908 636 SMART LRR_CC_2 524 549 IPR006553 -
Amo19g3908 636 SMART LRR_CC_2 308 333 IPR006553 -
Amo19g3908 636 ProSiteProfiles F-box domain profile. 4 50 IPR001810 GO:0005515
Amo19g3908 636 Gene3D Ribonuclease Inhibitor 259 350 IPR032675 -
Amo19g3908 636 Coils Coil 633 636 - -
Amo19g3908 636 SUPERFAMILY RNI-like 296 561 - -
Amo19g3908 636 SUPERFAMILY RNI-like 49 284 - -
Amo19g3908 636 PANTHER RNI-LIKE SUPERFAMILY PROTEIN-RELATED 10 558 - -
Amo19g3908 636 Gene3D Ribonuclease Inhibitor 351 596 IPR032675 -
Amo19g3908 636 SUPERFAMILY F-box domain 6 42 IPR036047 GO:0005515
Amo19g3908 636 Pfam F-box domain 7 44 IPR001810 GO:0005515
Amo19g3908 636 Pfam Leucine Rich repeat 385 407 IPR001611 GO:0005515
Amo19g3908 636 PANTHER UNCHARACTERIZED 10 558 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3908 - - gmx:100789353 1072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3908 19 154791973 154795205 Amo19g3908 19 154791973 154795205 ECH