Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01885 ATGGCTCCTTTTACAATTTCCACATTGCCCTCATTAAACATCTGCCATTTCCGAAAGCCTGGTAATCGTATTCTTCCTATTCGCTGCTCCACGGCTGCTTCTCCTTCCTCGGTTTCTATCCGATCAAAAGCTGCTGACTTTGATTTGAAGACATATTGGACTTCCTTAATGGTGCAGATCAATCAGAAGCTCGATGAAGCTATTCCAGTTAAATTTCCTCAGCAGATATATGAAGCTATGAGGTATTCTTCCCTTGCCAAAGGTGCCAAGCGAGCCCCACCTGTTATGTGCATCTCTGCTTGTGAACTCTTTGGGGGCAGCCGCCTTGCTGCCTTCCCCACTGCCTGTGCTCTTGAGATGGTTCATGCTGCTTCGTTGATACACGATGATCTTCCCTGTATGGATGACTCTTCATCACGCCGTGGCCACCCCTCAAACCACACTATCTATGGTGTTGACATGGCAATTCTTGCGGGGCAGTTCTTGGACCTTGAAGGGGGTCCAAATGCAGTTGGATTTATACAAGATAAAAAGTTTGGTGAAATGGGGGAGTGTTCTGCAGTGTGTGGAGGATTGTTGGCCGGTGCCAAAGATGATGAGATAGAGAGACTGAGGAGGTATGGTAGAGCTGTTGGAGTATTGTATGCAGTTGTGGATGATATTTTGGAAGAGAAGTTGAAACCTGAGGGAGATAAAGACAGGAAAAACAGAGGGAAGAGTTATGTAGGCGTTTATGGGGTTGAAAAAGCAGCAGAGATAGCTGAAGAACTTAGAGCAAAGGCTATGGAGGAATTGGATGGATTTGAGAAGTATGGAGATCAAGTGTTGCCTCTATACAGTTTTGTGAATTATGCTATTGATAGAAGTTTCAATGTTGATGACGCCAGTGGATGA 894 0.4519 MAPFTISTLPSLNICHFRKPGNRILPIRCSTAASPSSVSIRSKAADFDLKTYWTSLMVQINQKLDEAIPVKFPQQIYEAMRYSSLAKGAKRAPPVMCISACELFGGSRLAAFPTACALEMVHAASLIHDDLPCMDDSSSRRGHPSNHTIYGVDMAILAGQFLDLEGGPNAVGFIQDKKFGEMGECSAVCGGLLAGAKDDEIERLRRYGRAVGVLYAVVDDILEEKLKPEGDKDRKNRGKSYVGVYGVEKAAEIAEELRAKAMEELDGFEKYGDQVLPLYSFVNYAIDRSFNVDDASG 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01885 297 Pfam Polyprenyl synthetase 75 162 IPR000092 GO:0008299
Vifa6g01885 297 ProSitePatterns Polyprenyl synthases signature 1. 126 142 IPR033749 -
Vifa6g01885 297 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 8 162 - -
Vifa6g01885 297 Gene3D Farnesyl Diphosphate Synthase 46 163 IPR008949 -
Vifa6g01885 297 Gene3D Farnesyl Diphosphate Synthase 164 297 IPR008949 -
Vifa6g01885 297 SUPERFAMILY Terpenoid synthases 50 269 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01885 Vifa-Chr6 703924459 703926073 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01885 K13789 - gmx:100788186 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01885 6 703924459 703926073 Vifa6g01885 6 703924459 703926073 ECH