Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0198 ATGGCGAGCGAGGAGGCGAGTCTGGATCGCCTCCCTTCCGCTCTGGTGGCCACCATCATGACGAAGCTCGACATCGCTTCCATCTGTTCCTTGGCCTCCACCTCCTCCACCTTCCGCTCCTGCGCCCGACACATCCTCTCCTTCCTCCCCTCTTTCCACCTCCTCGACATTGCGCCTTCGGGGGACTTGCTCAGACCCTTGCTGCCGCCCAATCCCTGCCTCATGAGTCTCAAGGTCGATTGCGGTCGCCTCGACGATTCCGCAATTGCCTTCTTGCTCAAACCCTCCTTGAGCGACCTCTGTCTCCACAACTGCGCCGATTTCAGCGGGAGACTCTTGTCTGAGATTGGGACCCGATGCAAGGATCTAAGGTCTCTCTACTTGGGCTCCGTGGCGGAGCAAAGAGGGAGGGCAATTCATATTTCTGATCTGGAGGAGTTGCTTGGCGGTTGCTCCCACTTGGAAGCACTGATTCTGATGTTTGATGTCTCTCTCTTTCTACGTCACAACTTTGCTCGAGTATGGGCTTCTGCATCACAGAAACTCACTTCTCTTGAGATTGGCTACATTTCTTCAGTTACGGTGACTGAGCTGCTTAGCCCAAATTTGGGATCCCATCTGCCCTCAAATCCTGTTCAACCATGCATACTTCCAAGCATTCAGAAACTATGTCTTAATGTAGACTATATAACTGATGCTATGGTTGGTACAATATCCAAAGGTCTCATCCTTTTGACCCATTTGGATCTTCAAGATGCACCGTTGATTGAACCAAGAATTACATTTGACCTAACCAATGCTGGTCTTCAACAAATTAATCAGCTTGGGAGATTGAAACATCTTTCATTGGTTCGAAGCCAAGAGTTCCTAATTACCTACTTTCGAAGAGTGAATGATCTGGGACTACTTCTAATGGCTGACAAGTGTGCAAACTTGGAGAGCATATGCCTTGGTGGCTTTTGTCGTGTCACAGACACAGGCTTCAAAACTATCCTGCATTCTTGCACTCGCTTATACAAGCTGAAGGTCACTCATGGGACTCATTTAACTGATCTAGTTTTTCATGATATTTCTGCAACATCCCTTACTTTAACACATGTTAGCTTAAGACGGTGCAATCTGTTAACCAACCATGCTGTTTTGAGTTTGGCATCAAACAAGGAACTTAAAGTTCTTGACTTGAGAGATTGCAGGAGCCTTGGAGATGAAGCTCTCCAGGCCATTGGCACTCTTCCAAGACTGAAAATTTTACTATTAGATGGCTCTGATATAACTGATGCAGGACTTTTGTACTTAAGACCATCTGTTATTAGTTCACTATATGCGTTGTCTCTTCGAGGTTGCAAGAGGCTTACAGATAAATGCATCACAGCTCTATTTAATGGCTGCTGTGTGCTGGAATTGCGAGAACTGGATCTATCTAATCTTCCTAACCTCTCAGATAATGGAGTTCTGCTGCTAGCAAAAAGTCGGATTCCCTTTTTTGAACTCCGGATGCGACAATGCCCTCTAATTGGTGATACTTCGGTCATGGCATTAGCTTCAATGCTGGTTGATGAGGCCAGACATGGAAGTAGTTTGCGTTTGTTGGATCTTTATAACTGTGGTGGCATTACACTGCTTGCATTTCGCTGGTTGAAGAAACCATATTTTCCAAGGCTCAAATGGTTGGGAGTGACCGGAAATGCTAATAGAGACATGGTAGATGCTTTAGCCAGAAGCAGACCTTTCTTACATGTGGCATGCCATGGTGAGGAGCTTGGGGCTGATCCCTATGACACCTCAGATGGGTTATATACACATGATTATGATGATGTGGATGAATTTGAGCAGTGGCTTCTTGAAGGGGATATGGATGGTAACTATGAAGAGATGGGCGATCTGGAAAATAATGACGAAATGGTTGTGTAA 1911 0.4605 MASEEASLDRLPSALVATIMTKLDIASICSLASTSSTFRSCARHILSFLPSFHLLDIAPSGDLLRPLLPPNPCLMSLKVDCGRLDDSAIAFLLKPSLSDLCLHNCADFSGRLLSEIGTRCKDLRSLYLGSVAEQRGRAIHISDLEELLGGCSHLEALILMFDVSLFLRHNFARVWASASQKLTSLEIGYISSVTVTELLSPNLGSHLPSNPVQPCILPSIQKLCLNVDYITDAMVGTISKGLILLTHLDLQDAPLIEPRITFDLTNAGLQQINQLGRLKHLSLVRSQEFLITYFRRVNDLGLLLMADKCANLESICLGGFCRVTDTGFKTILHSCTRLYKLKVTHGTHLTDLVFHDISATSLTLTHVSLRRCNLLTNHAVLSLASNKELKVLDLRDCRSLGDEALQAIGTLPRLKILLLDGSDITDAGLLYLRPSVISSLYALSLRGCKRLTDKCITALFNGCCVLELRELDLSNLPNLSDNGVLLLAKSRIPFFELRMRQCPLIGDTSVMALASMLVDEARHGSSLRLLDLYNCGGITLLAFRWLKKPYFPRLKWLGVTGNANRDMVDALARSRPFLHVACHGEELGADPYDTSDGLYTHDYDDVDEFEQWLLEGDMDGNYEEMGDLENNDEMVV 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0198 636 SUPERFAMILY RNI-like 47 285 - -
Ssu7g0198 636 Pfam F-box domain 8 45 IPR001810 GO:0005515
Ssu7g0198 636 PANTHER UNCHARACTERIZED 11 559 - -
Ssu7g0198 636 SUPERFAMILY RNI-like 297 564 - -
Ssu7g0198 636 PANTHER RNI-LIKE SUPERFAMILY PROTEIN-RELATED 11 559 - -
Ssu7g0198 636 SMART LRR_CC_2 524 549 IPR006553 -
Ssu7g0198 636 SMART LRR_CC_2 309 334 IPR006553 -
Ssu7g0198 636 SMART LRR_CC_2 94 119 IPR006553 -
Ssu7g0198 636 SMART LRR_CC_2 437 462 IPR006553 -
Ssu7g0198 636 SMART LRR_CC_2 387 411 IPR006553 -
Ssu7g0198 636 SMART LRR_CC_2 496 516 IPR006553 -
Ssu7g0198 636 SMART LRR_CC_2 361 386 IPR006553 -
Ssu7g0198 636 SMART LRR_CC_2 465 490 IPR006553 -
Ssu7g0198 636 Pfam Leucine Rich repeat 386 408 IPR001611 GO:0005515
Ssu7g0198 636 Gene3D Ribonuclease Inhibitor 4 406 IPR032675 -
Ssu7g0198 636 Gene3D Ribonuclease Inhibitor 407 599 IPR032675 -
Ssu7g0198 636 SUPERFAMILY F-box domain 4 44 IPR036047 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0198 - - pvu:PHAVU_007G016400g 1173.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0198 7 3260872 3263616 Ssu7g0198 7 3260872 3263616 ECH