Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0260 ATGGCCAGGAGAGCCCTCCCCATCGTCAAGCAACTCGTCGGCCGGTCGTCGTTCGATCCCCACCCTCTCCTAGGGTTAGGGTCCCGATCCGTGACCTACATGCCTCGTCCTGGCGACGGCTCTCCGCGCGCCGTCACTCTGATCCCCGGAGACGGCATCGGGCCTCTGGTCACGGGCGCCGTCGAGCAGGTCATGGAGGCGATGCATGCGCCGGTGTACTTCGAGAAGTACGAGATTCACGGGGATATGAAGACGGTGCCACCGGAGGTGATGGAGTCGATTCACAAGAACAAGGTGTGTTTGAAGGGAGGTTTGTCGACGCCGGTGGGCGGTGGTGTGAATTCGTTGAATGTTCAGCTGAGGAAGGAGCTCGACCTTTATGCCTCGCTTGTGAATTGCTGCAATTTGCCTGGTTTGCCGACGCGGCACAATGATGTTGATATTGTTGTGGTGAGGGAGAACACGGAGGGCGAGTACGCTGGGCTTGAGCACGAGGTCGTTCCCGGCGTGGTCGAAAGCCTTAAGTTCTGCTCCGAACGAATTGCAAAATATGCCTTTGAGTATTCTTACCTAAACAACCGAAAGAAAGTGACAGCTGTGCACAAAGCCAACATTATGAAACTTGCAGACGGTCTCTTCTTAGAATCCTGTCGGGAAGTTGCGAAAAATTACCCCAGTATTGCATACAGCGAAATTATTGTGGATAACTGCTGCATGCAACTGGTTTCAAAGCCGGAGCAATTTGATGTCATGGTGACACCTAATCTTTATGGAAATCTGGTGGCAAATACTGCAGCTGGTATTGCAGGAGGCACTGGTGTCATGCCAGGAGGCAATGTGGGTGCTGATCACGCCATTTTTGAGCAAGGTGCTTCAGCGGGAAATGTTGGTAATGAAAAGATAGCACAGCAAAAGAAGGCAAATCCAGTGGCTTTGCTCCTCTCATCAGCCATGATGCTGAGGCATCTCCAATTTCCTTCATTTGCTGATCGACTAGAGACTGCTGTGAAAACTGTAATCTCAGAGGGCAAGTACAGGACAAAAGATCTTGGTGGGACAAGCACCACCCAGGAGGTTGTTGATGCTGTCATTGCAGCTCTAGACTGA 1107 0.5203 MARRALPIVKQLVGRSSFDPHPLLGLGSRSVTYMPRPGDGSPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKYEIHGDMKTVPPEVMESIHKNKVCLKGGLSTPVGGGVNSLNVQLRKELDLYASLVNCCNLPGLPTRHNDVDIVVVRENTEGEYAGLEHEVVPGVVESLKFCSERIAKYAFEYSYLNNRKKVTAVHKANIMKLADGLFLESCREVAKNYPSIAYSEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAIFEQGASAGNVGNEKIAQQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKTVISEGKYRTKDLGGTSTTQEVVDAVIAALD* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0260 368 NCBIfam isocitrate dehydrogenase (NAD(+)) 41 366 IPR004434 GO:0006099
Vvi3g0260 368 Gene3D Isopropylmalate Dehydrogenase 32 367 - -
Vvi3g0260 368 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 42 367 - -
Vvi3g0260 368 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 44 367 - -
Vvi3g0260 368 FunFam Isocitrate dehydrogenase [NAD] regulatory subunit 1 32 367 - -
Vvi3g0260 368 Pfam Isocitrate/isopropylmalate dehydrogenase 45 363 IPR024084 -
Vvi3g0260 368 SMART Iso_dh_2 44 363 IPR024084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0260 Vvi-Chr3 2231737 2242125 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0260 K00030 - vvi:100253697 715.301