Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0253 ATGCAGTTCGATCTCCGTTCCTACTGGACCACCCTGATTTCAGAGATCAACACCAAGCTCGAGGAAGCCATTCCGGTGAAGTATCCGCAACAGATCTACGAAGCCATGCGCTACTCCGTGCTAGCAAAAGGCGGGAAGCGAGCTCCCCCGGTGATGTGCGTCGCCGTCTGTGAGCTTTTCGGCGGCGACCGCCTTGCTGCCTTTCCGACCGCCTGTGCCCTAGAAATGGTGGTGGACGATATGCTGAAAGCGAAGACGAAGAGTGAGGAAGACGAAGAGAAGAAAAAGAAAGGGAAGAGCTATGTGGACGTGTACGGCCATGGAAGTGGCGGAGGAGCTTCGAGCCAAGGCGAAGAGAGAGTTGAGTGGATTCGACAAGTATGGCGACAGCGTCGTTCCGCTTTACAGCTTTGTGGACTTCGCCGCGGAAAGAGGCTTTACCATCGATACTTCTGTCTGATGTGTATCCAATTGTTGCCGGCGGCACTGCTGGCAACGATCATGACGAAGCTCGACGTCTCCTCGATTCGCTCCCTAGCGTCCACGTGCACTACCATCCGCTCATGCGCTTCTCAAATCTTCCACTTCCTCCCCAATTTCCATCTCCTCGATGTTGCACTCTCAATCAACTTGCTGAGGCCTTTGCTGCCACCAAATCCTTATCTTAGGAGTTTGAAAGTTGATTGCAGTAAACTTGATGATTCATCAATTGAACATCTGGTTCGCCCATCTTTGCATGAGATTTCTCTCCTCAATTGTGCTGATTTTAGTGGGAGGCTGCTATCTCTGATTGGAGGTCAATGCAAGGATTTAAGGTCTCTCTACTTGGGTTGTGTGGCTGAGAAAAGAGGACGAGCAGTCCATATTTCTAACCTTGAGGAGTTACTCTGTGGTTGCACTGAGTTAAAAACGCTAAGCCTGATGTTCGATATTTCACTATTTCCTCGTTATAATTTTGCTCGAACAGTATCTAAATGTCTCATCAACTTAACTCATCTGGATCTTCGAGATGCACCCATCATTGAACCAAGAGTCACATTTGACCTCACGAACTCCGGTTTTCAACAGATTAATCAACGTGGGAAGTTGAAACACCTCTCCTTGGTTCGTAGCCAGGAGTTCCTAATTACATACTTCAAACGAGTTAACGATCTAGGAATCCTCCTAATGGCCGACAGATGCTCTAGTATGGAAAGTATATGTCTTGGTGGCTTTTGTCGTGTAACAGATTCTGGTTTCAAAACAATCCTGCACTCGTGCTCGACCTTATACAAGCTTAGGGCAGTCATAAGTTTGGCATCCAACTTGGATCTTAGGGTTCTTGACTTGAGAGACTGCAGGAACCTTGGGGATGAAGCCCTCCAAGCCATCAGCACTCTTCATAAATTGAAGATTTTACTATTGGATGGGTCTGATATTACAGATGCGGGTTTGTCATACTTGAGAGAGGGAGTGATAGGCTCACTAGTTTCATTGTCCATTAGAGGGTGCAAAAGGCTTACGGATAAATGCATCTCTGCTCTATTTGATCCCTCTTCCAAACAGGAGTTGCAAGAATTGGACCTATCTAATCTTCCTAACCTATCTGATAATGGAATATTCTCGCTGGCTAAAAGTCGTGTTCCAATTCTTGAACTCAGGATGCGACAATGTCCACTCATAGGTGACAGTTCAATCATGGCATTAGCCTCAATGCAGGTTGACGATCATAGATCACATGGCAGTAGTTTGCGGGTGTTGGATCTTTATAACTGTGGTGGCATTACATCTCTTTCTTTCCGGTGGTTAAAGAACCCTTACTTTCCCAGACTGAGATGGTTGGGAGTGACAGGAAGCGTGAACAGAGACATGGTAGACGCTTTAGCTAGAAGTAGACCCTTCTTGCATGTGGCATGCCATGGTGAGGAGCTAGGGACTGACCACTGGGATGGTTTGTACATGCATGATAATGAAGAAATGGATGAACTTGAACAGTGGCTGCTCGAAGGAGGGGATGAGAGTGACGATGAAGAGATGGAAGAAGTTGAAAACAATGGAGAAATTGTCGAAGAGAGAGAGGGGCGGTCTGCCATGGCGTTCACAACCGCTCTATCGCTGCCCTCCGCTGCCCGCCTCCACCACCGCCTTCCGAACCGATCTTCTCTGAACCTACCACGCACAATTCGATGCACTTCTCCTTCAATTTCAGTCTCACCGTCAAAATCAATGCAGTTCGATCTCCGTTCCTACTGGACCACCCTGATTTCAGAGATCAACACCAAGCTCGAGGAAGCCATTCCGGTGAAGTATCCGCAACAGATCTACGAAGCCATGCGCTACTCCGTGCTAGCAAAAGGCGGGAAGCGAGCTCCCCCGGTGATGTGCGTCGCCGTCTGTGAGCTTTTCGGCGGCGACCGCCTTGCTGCCTTTCCGACCGCCTGTGCCCTAGAAATGGTTCACGCGGCTTCACTGATTCACGACGACCTTCCCTGCATGGACGATGACCCCTCCCGGCGGGGCCAGCCCTCGAACCACACCGTCTACGGCGTCGACATGGCCATTCTCGCCGGCGACGCCCTCTTCCCCCTCGGATTCCGCCACATCGTCTCCCACACCCCTTCCCACCTCGTCCCAGAGGGCCAGCTCATCCGCGTCATCGCGGAAATCGCCCGCTCCGTCGGCTCCACCGGCATGGCCGCCGGCCAGTTCCTCGACCTCGAGGGCGCCCCCAACTCCGTCGACTTCGTCCAGCGCAAGAAGTTCGGCGAGATGGCTGAGTGCTCCGCTGTTTGTGGCGGGTTCCTGGGCGGCGCCGCCGACGATGATATCCTACGCCTTAGGAGATACGGCCGAGCTGTCGGGATGTTGTACCAGGTGGTGGACGATGTGCTGAAAGCGAAGACGAAGAGTGAGGAAGACGAAGAGAAGAAAAAGAAAGGGAAGAGCTATGTGGACGTGTACGGTATGGAGAAGGCCATGGAAGTGGCGGAGGAGCTTCGAGCCAAGGCGAAGAGAGAGTTGAGTGGATTCGACAAGTATGGCGACAGCGTCGTTCCGCTTTACAGCTTTGTGGACTTCGCCGCGGAAAGAGGCTTTACCATCGATACTTCTATCGGGAGAGAGAGAATGGCGAATAGCGAAGCCGCCGGAGGGGCTCTGGAGCAGTTGCCGGCGGCACTGCTGGCAACGATCATGACGAAGCTCGACGTCTCCTCGATTCGCTCCCTAGCGTCCACGTGCACTACCATCCGCTCATGCGCTTCTCAAATCTTCCACTTCCTCCCCAATTTCCATCTCCTCGATGTTGCACTCTCAATCAACTTGCTGAGGCCTTTGCTGCCACCAAATCCTTATCTTAGGAGTTTGAAAGTTGATTGCAGTAAACTTGATGATTCATCAATTGAACATCTGGTTCGGCCATCTTTGCATGAGATTTCTCTCCTCAATTGTGCTGATTTTAGTGGGAGGCTGCTTTCTCTGATTGGAGGTCAATGCAAGGATTTAAGGTCTCTCTACTTGGGTTGTGTGGCTGAGAAAAGAGGACGAGCAGTCCATATTTCTAACCTTGAGGAGTTACTCTGTGGTTGCACTGAGTTAAAAACACTAAGCCTGATGTTCGATATTTCACTATTTCCTCGTTATAATTTTGCTCGAGCCTGGTCTTTGGCTTCAGAGAATCTCACAAGTCTTGAGATTGGCTATGTTTCTTCAGTTATGGTGACTGAACTGCTCAGCCCTAATGTGGGACCCCATCAGCCCCCAAATCATCTCCAGCCATCCATATTGCCGAGTCTTCAGAGATTGTGCCTCTCAGTGGATTATATTACTGACACTATGGTTGAGACAGTATCTAAATGTCTCATCAACTTAACTCATCTGGATCTTCGAGATGCACCCATCATTGAACCAAGAGTCACATTTGACCTCACAAACTCCGGTTTTCAACAGATTAATCAACGTGGGAAGTTGAAACACCTCTCCTTGGTTCGTAGCCAGGAGTTCCTAATTACATACTTCAAACGAGTTAACGATCTAGGAATCCTCCTAATGGCCGACAGATGCTCTAGTATGGAAAGTATATGTCTTGGTGGCTTTTGTCGAGTAACAGATTCTGGTTTCAAAACAATCCTGCACTCGTGCTCGACCTTATACAAGCTTAGGGCAGTCATAAGTTTGGCATCCAACTTGGATCTTAGGGTTCTTGACTTGAGAGACTGCAGAAACCTTGGGGATGAAGCCCTCCAAGCCATCAGCACTCTTCATAAATTGAAGATTTTACTATTGGATGGGTCTGATATTACAGATGCGGGTTTGTCATACTTGAGAGAGGGAGTGATAGGCTCACTAGTTTCATTGTCCATTAGAGGGTGCAAAAGGCTTACGGATAAATGCATCTCTGCTCTATTTGATCCCTCTTCCAAACAGGAGTTGCAAGAATTGGACCTATCTAATCTTCCTAACCTATCTGATAATGGAATATTCTCGCTGGCTAAAAGTCGTGTTCCAATTCTTGAACTCAGGATGCGACAATGTCCACTCATAGGTGACACTTCAATCATGGCGTTAGCCTCAATGCAGGTTGACGATCATAGATCACATGGCAGTAGTTTGCGGGTGTTGGATCTTTATAACTGTGGTGGCATTACATCTCTTTCTTTCCGGTGGTTAAAGAACCCTTACTTTCCCAGACTGAGATGGTTGGGAGTGACAGGAAGCGTGAACAGAGACATGGTAGACGCTTTAGCTAGAAGTAGACCCTTCTTGCATGTGGCATGCCATGGTGAGGAGCTAGGGACTGACCACTGGGATGGTTTGTACATGCATGATAATGAAGAAATGGATGAACTTGAACAGTGGCTGCTCGAAGGAGGGGATGAGAGTGACGATGAAGAGATGGAAGAAGTTGAAAACAATGGAGAAATGACTTTACTTCAGACAGTCTCGGCTTGGTTTTCTGACTTGAACCTCCATCAGAAAGCCCTTCTGACAGTGCTGCTCCAGATTTGCTGGGCCATCAGGCCCAGGCACAGCTGCCCCCACCATCGGGTATATTCTTGCCAGAGAAGGCCCCTCAGTTGA 5058 0.4911 MQFDLRSYWTTLISEINTKLEEAIPVKYPQQIYEAMRYSVLAKGGKRAPPVMCVAVCELFGGDRLAAFPTACALEMVVDDMLKAKTKSEEDEEKKKKGKSYVDVYGHGSGGGASSQGEERVEWIRQVWRQRRSALQLCGLRRGKRLYHRYFCLMCIQLLPAALLATIMTKLDVSSIRSLASTCTTIRSCASQIFHFLPNFHLLDVALSINLLRPLLPPNPYLRSLKVDCSKLDDSSIEHLVRPSLHEISLLNCADFSGRLLSLIGGQCKDLRSLYLGCVAEKRGRAVHISNLEELLCGCTELKTLSLMFDISLFPRYNFARTVSKCLINLTHLDLRDAPIIEPRVTFDLTNSGFQQINQRGKLKHLSLVRSQEFLITYFKRVNDLGILLMADRCSSMESICLGGFCRVTDSGFKTILHSCSTLYKLRAVISLASNLDLRVLDLRDCRNLGDEALQAISTLHKLKILLLDGSDITDAGLSYLREGVIGSLVSLSIRGCKRLTDKCISALFDPSSKQELQELDLSNLPNLSDNGIFSLAKSRVPILELRMRQCPLIGDSSIMALASMQVDDHRSHGSSLRVLDLYNCGGITSLSFRWLKNPYFPRLRWLGVTGSVNRDMVDALARSRPFLHVACHGEELGTDHWDGLYMHDNEEMDELEQWLLEGGDESDDEEMEEVENNGEIVEEREGRSAMAFTTALSLPSAARLHHRLPNRSSLNLPRTIRCTSPSISVSPSKSMQFDLRSYWTTLISEINTKLEEAIPVKYPQQIYEAMRYSVLAKGGKRAPPVMCVAVCELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFRHIVSHTPSHLVPEGQLIRVIAEIARSVGSTGMAAGQFLDLEGAPNSVDFVQRKKFGEMAECSAVCGGFLGGAADDDILRLRRYGRAVGMLYQVVDDVLKAKTKSEEDEEKKKKGKSYVDVYGMEKAMEVAEELRAKAKRELSGFDKYGDSVVPLYSFVDFAAERGFTIDTSIGRERMANSEAAGGALEQLPAALLATIMTKLDVSSIRSLASTCTTIRSCASQIFHFLPNFHLLDVALSINLLRPLLPPNPYLRSLKVDCSKLDDSSIEHLVRPSLHEISLLNCADFSGRLLSLIGGQCKDLRSLYLGCVAEKRGRAVHISNLEELLCGCTELKTLSLMFDISLFPRYNFARAWSLASENLTSLEIGYVSSVMVTELLSPNVGPHQPPNHLQPSILPSLQRLCLSVDYITDTMVETVSKCLINLTHLDLRDAPIIEPRVTFDLTNSGFQQINQRGKLKHLSLVRSQEFLITYFKRVNDLGILLMADRCSSMESICLGGFCRVTDSGFKTILHSCSTLYKLRAVISLASNLDLRVLDLRDCRNLGDEALQAISTLHKLKILLLDGSDITDAGLSYLREGVIGSLVSLSIRGCKRLTDKCISALFDPSSKQELQELDLSNLPNLSDNGIFSLAKSRVPILELRMRQCPLIGDTSIMALASMQVDDHRSHGSSLRVLDLYNCGGITSLSFRWLKNPYFPRLRWLGVTGSVNRDMVDALARSRPFLHVACHGEELGTDHWDGLYMHDNEEMDELEQWLLEGGDESDDEEMEEVENNGEMTLLQTVSAWFSDLNLHQKALLTVLLQICWAIRPRHSCPHHRVYSCQRRPLS* 1686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0253 1685 SUPERFAMILY L domain-like 1081 1290 - -
Vvi3g0253 1685 Gene3D Farnesyl Diphosphate Synthase 737 1033 IPR008949 -
Vvi3g0253 1685 CDD Trans_IPPS_HT 764 1023 IPR000092 GO:0008299
Vvi3g0253 1685 Gene3D Farnesyl Diphosphate Synthase 3 81 IPR008949 -
Vvi3g0253 1685 Pfam F-box domain 1047 1081 IPR001810 GO:0005515
Vvi3g0253 1685 Pfam F-box domain 158 191 IPR001810 GO:0005515
Vvi3g0253 1685 Gene3D Ribonuclease Inhibitor 1078 1466 IPR032675 -
Vvi3g0253 1685 Gene3D Ribonuclease Inhibitor 205 512 IPR032675 -
Vvi3g0253 1685 FunFam Geranylgeranyl diphosphate synthase 737 1025 - -
Vvi3g0253 1685 SUPERFAMILY RNI-like 1255 1564 - -
Vvi3g0253 1685 Pfam Leucine Rich repeat 435 458 IPR001611 GO:0005515
Vvi3g0253 1685 Pfam Leucine Rich repeat 1388 1411 IPR001611 GO:0005515
Vvi3g0253 1685 SUPERFAMILY Terpenoid synthases 742 1004 IPR008949 -
Vvi3g0253 1685 Pfam Polyprenyl synthetase 765 965 IPR000092 GO:0008299
Vvi3g0253 1685 SMART fbox_2 159 199 IPR001810 GO:0005515
Vvi3g0253 1685 SMART fbox_2 1049 1089 IPR001810 GO:0005515
Vvi3g0253 1685 SMART LRR_CC_2 1493 1518 IPR006553 -
Vvi3g0253 1685 SMART LRR_CC_2 1388 1413 IPR006553 -
Vvi3g0253 1685 SMART LRR_CC_2 1467 1492 IPR006553 -
Vvi3g0253 1685 SMART LRR_CC_2 574 599 IPR006553 -
Vvi3g0253 1685 SMART LRR_CC_2 486 511 IPR006553 -
Vvi3g0253 1685 SMART LRR_CC_2 394 419 IPR006553 -
Vvi3g0253 1685 SMART LRR_CC_2 540 565 IPR006553 -
Vvi3g0253 1685 SMART LRR_CC_2 514 539 IPR006553 -
Vvi3g0253 1685 SMART LRR_CC_2 435 460 IPR006553 -
Vvi3g0253 1685 SMART LRR_CC_2 1255 1279 IPR006553 -
Vvi3g0253 1685 SMART LRR_CC_2 1347 1372 IPR006553 -
Vvi3g0253 1685 SMART LRR_CC_2 1527 1552 IPR006553 -
Vvi3g0253 1685 SMART LRR_CC_2 1439 1464 IPR006553 -
Vvi3g0253 1685 Gene3D Ribonuclease Inhibitor 1467 1585 IPR032675 -
Vvi3g0253 1685 Gene3D Ribonuclease Inhibitor 513 632 IPR032675 -
Vvi3g0253 1685 SFLD Isoprenoid Synthase Type I 768 1005 - -
Vvi3g0253 1685 SUPERFAMILY Terpenoid synthases 7 80 IPR008949 -
Vvi3g0253 1685 SUPERFAMILY RNI-like 289 611 - -
Vvi3g0253 1685 ProSitePatterns Polyprenyl synthases signature 1. 817 833 IPR033749 -
Vvi3g0253 1685 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 689 1024 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0253 Vvi-Chr3 2169630 2191813 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0253 - - vvi:100853822 1124.77