Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g05007 ATGTTTGATGTATCCCTCTTTCTACGTCATAACTTAGCTCGAGTTTGGGCTTCTGCGTCTGAGAAACTTACTTCTCTTGAGATTGGATATATTTCATCAGTTACGGTGATTGAACTGTTCAGCTCAAATTTGGGATCTCATCAACCCCTTAATCCTATTCAACCATCCATACTTCCTGGAATTCAAAAATTGTGTCTTTCGGTAAACTATATAACGGATGCTATGGTTGCCACAATATCCCAAAGTCTCATCTGTTTGACCCATTTGGATCTTCGTGATGCTCCATTTGTTGAACCTAGAATTACATTTGATCTTACAAATTCTGGTCTTCAGCAAATTAATCAACTCGGGAGATTGAAACATCTTTCATTGATCCGAAGCCAAGAGTTCATAATTTGTTATTTTCGAAGAGTAAACGATTTAGGATTACTCTTAATGGCTGACAAATGTGCAAACATGGAGAGCATATGCCTTGGCGGCTTTTGTCGTGTCACAGACACCGGAATCAAAACTATGCTGCACTCTTGTTCTCGTCTATATAAGCTTAAGGTCACTCATGGGACTCAATTAACTGATCTAGTTTTTCATGATATCTCTGCAACATCCCTTACTTTAACACACGTGAGCTTAAGATGGTGTAAGTTGTTAACCGATCATGCAGTTCTTAGTTTGACATCAAACAAGGAACTTAAGGTTCTCGATTTGAGAGATTGCAGAAGCCTTGGGGATGATGCTCTCCGAGCCATTGGCGGACTTTTGAGACTGAAAATTTTACTTATTGATGGCTGTGATATAACTGATGCTGGACTTTCATACTTACGACCGACCGTTATTAATTCATTGTATGCATTGTCTCTTCGAGGGTGCAAGAGACTCACAGATAAATGTATAACAGTTCTGTTTGATGGTTGCGGCAAGCTAGAATTAAGAGATCTAGATCTGTCAAATCTTCCTAACCTCTCAGATAATGGAGTCTTACAACTGGCAAAAAGCCGAATTCCTTTCTTGGATCTCCGAATGCGACAATGCCCTCTAATTGGCGATACCTCAATCATGGCACTGGCTTcaatgatgattgatgatgctGGATGGTGTGTAAGTGGTCTGCGCTTGTTGGATCTGTATAACTGTGGTGGCATTACGCCACTTGCCTTTCGTTGGTTAAAGAAACCGTATTTTCCAAGGCTTAAATGGCTGGGTGTGACTGGAAGTGTTAATAGAGACATGGTAGATGCTTTAGCTAGAAGTAGACCCTTCTTGTATGTGGCATGTGATGGTGAGGAGCTTGGGCCTGACCCCTGTGACATGTCAGATGGTTTATATACACATGATTATGATGAGGTGGATGAATTTGAGCAGTGGCTTCTTGAAGCTGATTATGagactgatgatgaagaaatggtCGATGCTGAAATTAATGAAGAACTGATGATGTAG 1437 0.3953 MFDVSLFLRHNLARVWASASEKLTSLEIGYISSVTVIELFSSNLGSHQPLNPIQPSILPGIQKLCLSVNYITDAMVATISQSLICLTHLDLRDAPFVEPRITFDLTNSGLQQINQLGRLKHLSLIRSQEFIICYFRRVNDLGLLLMADKCANMESICLGGFCRVTDTGIKTMLHSCSRLYKLKVTHGTQLTDLVFHDISATSLTLTHVSLRWCKLLTDHAVLSLTSNKELKVLDLRDCRSLGDDALRAIGGLLRLKILLIDGCDITDAGLSYLRPTVINSLYALSLRGCKRLTDKCITVLFDGCGKLELRDLDLSNLPNLSDNGVLQLAKSRIPFLDLRMRQCPLIGDTSIMALASMMIDDAGWCVSGLRLLDLYNCGGITPLAFRWLKKPYFPRLKWLGVTGSVNRDMVDALARSRPFLYVACDGEELGPDPCDMSDGLYTHDYDEVDEFEQWLLEADYETDDEEMVDAEINEELMM 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g05007 478 Pfam Leucine Rich repeat 227 249 IPR001611 GO:0005515
Tsu01g05007 478 SMART LRR_CC_2 306 331 IPR006553 -
Tsu01g05007 478 SMART LRR_CC_2 202 227 IPR006553 -
Tsu01g05007 478 SMART LRR_CC_2 366 391 IPR006553 -
Tsu01g05007 478 SMART LRR_CC_2 333 357 IPR006553 -
Tsu01g05007 478 SMART LRR_CC_2 228 252 IPR006553 -
Tsu01g05007 478 SMART LRR_CC_2 278 303 IPR006553 -
Tsu01g05007 478 SMART LRR_CC_2 150 175 IPR006553 -
Tsu01g05007 478 PANTHER UNCHARACTERIZED 45 404 - -
Tsu01g05007 478 Gene3D Ribonuclease Inhibitor 3 276 IPR032675 -
Tsu01g05007 478 Gene3D Ribonuclease Inhibitor 277 416 IPR032675 -
Tsu01g05007 478 PANTHER RNI-LIKE SUPERFAMILY PROTEIN-RELATED 45 404 - -
Tsu01g05007 478 SUPERFAMILY RNI-like 54 390 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g05007 - - gmx:100789353 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g05007 01 56826832 56829997 Tsu01g05007 01 56826832 56829997 ECH