Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06208 ATGGCGACTGCGGAGGAGGTGAAACTAGATCAACTCCCTTACGCTCTCCTCGCCACCATCATGACCAAACTCGATATCGCTTCCGTCTGTTCATTGTCCGCCACTTCCTCCACCTTCCGCTCTTGCGCTAAACAAATCCTCTCCTTCCTCCCCAATTTCCATCTCATCGATATTGCGCCTTCGGAGGAGTTGATCACACCTTTGTTGCCACCAAATCCATATCTTAAGAGTCTTAAAGTTGATTGCGGTCGTCTTGATGATTCTGCAATCAATTTGTTGGTGAAACCTTCTTTGCATGAACTTTCTTTGTATAATTGTGCTGATTTTAGTGGGAAACTTCTCTCTAAAATTGGGACTCAATGCAAGGATCTAAGGTCTCTCTATTTGGGTTCTGTTGCAGAAAAAAGAGGGAGGGCAATTCATATATCTGATTTGGAGGAGTTACTCGGTGGTTGTTCTCAGTTGGAAGTTTTGATTCTAATGTTTGATGTCTCTCTCTTTCTACGTCATAACTTAGCTCGAGTCTGGGCTTCTGCTTCTGAGAAACTTACTTCTCTTGAGATTGGATATATTTCTTCAGTTACGGTGATTGAACTGTTCAGCTCAAATTTGGGATCTCATCAGCCTCTTAATCCTATTCAACCATCCATACTTCCTGGAATTCAAAAATTGTGTCTTTCGGTAAACTATATAACAGATGCTATGGTTGCCACAATATCCCAAAGTCTCATCTTTTTAACCCATTTGGATCTTCGTGATGCTCCATTTGTTGAACCAAGAATTACATTTGATCTAACCAATTCCGGCCTTCAGCAAATTAATCAACTTGGGAGATTGAAACATCTTTCATTGATCCGAAGCCAAGAGTTCATAATTTGCTACTTTCGAAGAGTAAACGATCTAGGGTTGCTCTTAATGGCTGACAAGTGTGCAAATATGGAGAGCATTTGTCTTGGCGGCTTTTGTCGTGTCACAGACACCGGAATCAAAACTATCCTGCACTCTTGCTCTCGTCTATACAAGCTTAAGGTCACTCATGGGACTCAACTAACTGATCTAGTTTTTCACGATATCTCTGCAACATCCCTTACTTTAACACACGTGAGCTTAAGATGGTGTAAGTTGTTAACCGATCAAGCAGTTCTTAGTTTGACATCAAACAAGGAACTCAAGGTTCTCGATTTGAGGGATTGCAGAAGCCTTGGGGATGAAGCCCTCCGAGCCATTGGCATACTTTCGAGACTTAAAATTTTACTCATTGATGGCTCTGATATAACTGATGCTGGACTTTCATACTTACGACCGACCGTTATTAATTCATTGTATGCATTGTCTCTTCGAGGGTGCAAGAGACTCACAGATAAATGTATAACAGTTCTGTTTGATGGTTGCGGCAAGCTAGAATTAAGAGACCTAGACCTATCAAATCTTCCTAACCTCTCAGATAATGGAGTCTTACAGCTGGCAAAAACCCGAATTCCTTTTTTGGATCTCCGAATGCGACAATGCCCTCTAATTGGTGATACCTCAATCATGGCACTGGCTTCAATGATGATTGATGATGCTGGATGGTGTGTAAGTGGTCTGCGCTTGTTGGATCTGTATAACTGTGGTGGCATTACGCCACTTGCCTTTCGTTGGTTAAAGAAACCGTATTTTCCAAGGCTTAAATGGCTGGGTGTGACCGGAAGTGTTAATAGAGACATGGTAGATGCTTTGGCTAGAAGTAGACCTTTCTTGTATGTGGCATGCGACGGTGAGGAGCTTGGGCCTGACCCCTGTGATATGTCAGATGGTTTATATACACATGATTATGATGAGGTGGATGAATTTGAGCAGTGGCTTCTTGAAGCTGATGTTGAGACTGATGATGAAGAAATGGTCGATGCTGAAATTAATGAAGAACTGATAATGTAG 1917 0.4199 MATAEEVKLDQLPYALLATIMTKLDIASVCSLSATSSTFRSCAKQILSFLPNFHLIDIAPSEELITPLLPPNPYLKSLKVDCGRLDDSAINLLVKPSLHELSLYNCADFSGKLLSKIGTQCKDLRSLYLGSVAEKRGRAIHISDLEELLGGCSQLEVLILMFDVSLFLRHNLARVWASASEKLTSLEIGYISSVTVIELFSSNLGSHQPLNPIQPSILPGIQKLCLSVNYITDAMVATISQSLIFLTHLDLRDAPFVEPRITFDLTNSGLQQINQLGRLKHLSLIRSQEFIICYFRRVNDLGLLLMADKCANMESICLGGFCRVTDTGIKTILHSCSRLYKLKVTHGTQLTDLVFHDISATSLTLTHVSLRWCKLLTDQAVLSLTSNKELKVLDLRDCRSLGDEALRAIGILSRLKILLIDGSDITDAGLSYLRPTVINSLYALSLRGCKRLTDKCITVLFDGCGKLELRDLDLSNLPNLSDNGVLQLAKTRIPFLDLRMRQCPLIGDTSIMALASMMIDDAGWCVSGLRLLDLYNCGGITPLAFRWLKKPYFPRLKWLGVTGSVNRDMVDALARSRPFLYVACDGEELGPDPCDMSDGLYTHDYDEVDEFEQWLLEADVETDDEEMVDAEINEELIM 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06208 638 PANTHER UNCHARACTERIZED 11 400 - -
Trre1g06208 638 SUPERFAMILY F-box domain 8 44 IPR036047 GO:0005515
Trre1g06208 638 Pfam Leucine Rich repeat 362 383 IPR001611 GO:0005515
Trre1g06208 638 Pfam Leucine Rich repeat 387 409 IPR001611 GO:0005515
Trre1g06208 638 SUPERFAMILY RNI-like 275 560 - -
Trre1g06208 638 SUPERFAMILY RNI-like 42 352 - -
Trre1g06208 638 SMART LRR_CC_2 526 551 IPR006553 -
Trre1g06208 638 SMART LRR_CC_2 310 335 IPR006553 -
Trre1g06208 638 SMART LRR_CC_2 493 517 IPR006553 -
Trre1g06208 638 SMART LRR_CC_2 95 120 IPR006553 -
Trre1g06208 638 SMART LRR_CC_2 362 387 IPR006553 -
Trre1g06208 638 SMART LRR_CC_2 438 463 IPR006553 -
Trre1g06208 638 SMART LRR_CC_2 388 412 IPR006553 -
Trre1g06208 638 SMART LRR_CC_2 466 491 IPR006553 -
Trre1g06208 638 Gene3D Ribonuclease Inhibitor 31 411 IPR032675 -
Trre1g06208 638 FunFam F-box/LRR-repeat protein 10 isoform A 46 462 - -
Trre1g06208 638 Pfam F-box domain 9 46 IPR001810 GO:0005515
Trre1g06208 638 Gene3D Ribonuclease Inhibitor 412 588 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06208 Trre-Chr1 65778187 65781014 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06208 - - gmx:100789353 1036.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06208 1 65778187 65781014 Trre1g06208 1 65778187 65781014 ECH