Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02748 ATGGCTCCTTTCGCAATTGCAACATTGGGAACTTCTCACACCTGCATCATCCCAAAGCCTGCGAATTTGAAAGTTCCAATTCGCTGCTCCGCTGCTTCTCCTTCTCCTTCTTCGATTTCCACTCGATCAAAAGCCTCTGACTTTGATTTGAGGACATATTGGGCTTCTCTAATGGTGCAGATCAATCAGAAGCTCGACGAAGCCATTCCAGTTCAGTTTCCTCCGCAGATATATGAAGCTATGCGGTATTCAGTCCTTGCCAAAGGTGTCAAGCGAGCCCCACCTGTTATGTGTATCTCTGCATGTGAACTCTTTGGGGGCAGCCGCCTTGCCGCCTTCCCTACTGCCTGCGCCCTTGAAATGGTTCATGCAGCTTCATTGATACATGATGATCTTCCCTGCATGGATGACTCCCCGTCACGCCGTGGGAAACCTTCAAATCATACCATCTATGGTGTTGACATGGCAATTCTTGCTGGTGATGCGCTTTTTCCCCTTGGATTTCGTCACATTGTTTCACAGACTCCGTCTGACCTTGTGCCTGAGCACAATCTTCTTCGTGTGATTGCCGAGATGGCTCGATCTGTGGGCTCCACTGGTATGGCTGCAGGGCAGTTCCTGGATCTTGAAGGAGGATCCAATGCAGTTGAATTTATACAAGAAAAAAAGTTTGGTGAAATGGGAGAGTGTTCTGCAGTGTGTGGAGGATTGTTGGCTGGAGCTGAAGATAATGAGATAGAGAGACTGAGGAGGTACGGGAGAGCTGTTGGGCTATTGTATGCAGTTGTGGATGATATTCTGGAAGATGGGTTGAAAGTTGAGGGAGGTGTTGACGGGAAAAACAAGGGCAAGAGTTATGCAGAGGTTAATGGAGTAGAAAAGGCAATAGAAAAAGCTGAAGAGCTCAGAGAAAAGGCTAAGGAAGAATTGGATGGATTTGAGAAGTACGGGGAGCGAGTCTTTCCTCTCTACAGTTTTGTGGATTATGCATTTGATAGAAGCTTCAATGCTGATGATGCCAGTGGATAA 1029 0.4713 MAPFAIATLGTSHTCIIPKPANLKVPIRCSAASPSPSSISTRSKASDFDLRTYWASLMVQINQKLDEAIPVQFPPQIYEAMRYSVLAKGVKRAPPVMCISACELFGGSRLAAFPTACALEMVHAASLIHDDLPCMDDSPSRRGKPSNHTIYGVDMAILAGDALFPLGFRHIVSQTPSDLVPEHNLLRVIAEMARSVGSTGMAAGQFLDLEGGSNAVEFIQEKKFGEMGECSAVCGGLLAGAEDNEIERLRRYGRAVGLLYAVVDDILEDGLKVEGGVDGKNKGKSYAEVNGVEKAIEKAEELREKAKEELDGFEKYGERVFPLYSFVDYAFDRSFNADDASG 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02748 342 SUPERFAMILY Terpenoid synthases 52 312 IPR008949 -
Vian1g02748 342 Coils Coil 289 316 - -
Vian1g02748 342 SFLD Isoprenoid Synthase Type I 78 321 - -
Vian1g02748 342 FunFam Geranylgeranyl diphosphate synthase 47 335 - -
Vian1g02748 342 CDD Trans_IPPS_HT 74 333 IPR000092 GO:0008299
Vian1g02748 342 ProSitePatterns Polyprenyl synthases signature 1. 127 143 IPR033749 -
Vian1g02748 342 Pfam Polyprenyl synthetase 76 268 IPR000092 GO:0008299
Vian1g02748 342 Gene3D Farnesyl Diphosphate Synthase 47 342 IPR008949 -
Vian1g02748 342 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 23 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02748 Vian-Chr1 42226563 42228085 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02748 K13789 - gmx:100788186 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02748 1 42226563 42228085 Vian1g02748 1 42226563 42228085 ECH