Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01969 ATGGCTCCTTTTGCAATTGCTACGTTGTCCTCTTCTCACATCTGCCACCTCCCAAAGCCTGCAAAATTGAAGCTTCCAATTCGCTGCTCCGCTGCTTCTTCTTCTCCTTCCTTTTTTTCCACTCGATCAAAAGCTTCTGACTTTGATTTGAGGACATATTGGGCTTCCCTAATGGTGCAGATCAATCATAAGCTCGACGAAGCTGTTCCAGTTCAGTTTCCTCCCCAGATATACGAAGCTATGAGGTACTCTGTCCTTGCCAAAGGTGCCAAGCGAGCTCCGCCTGTTATGTGCATCTCTGCATGTGAACTCTTTGGGGGCAACCGCCTAGCCGCCTTCCCCACTGCCTGCGCCCTTGAAATGGTTCACGCAGCTTCATTGATACATGATGATCTGCCCTGCATGGATGACTCTCCATCACGCCGTGGGCAGCCTTCAAACCATACGATCTATGGTGTTGACATGGCAATTCTTGCTGGTGATGCACTCTTTCCCCTTGGATTTCGTCACATTGTTTCACAGACTCCCTCTGACCTTGTGCCTGAGCCCAATCTCCTCCGTGTGATTGCTGAGATGGCCCGTTCTGTGGGCTCCACTGGTATGGCTGCAGGGCAGTTCCTGGACCTTGAAGGAGGACCCAATGCAGTTGAATTTATTCAGGAAAAAAAGTTTGGTGAAATGGGAGAGTGTTCTGCAGTGTGTGGAGGATTGCTGGCTGGAGCTGAAGACGATGAGATAGAGAGACTGAGGAGGTACGGGAAAGCTGTTGGTGTATTATATGCAGTTGTGGATGATATTCTGGAAGAGAGATTGAAAGCTGAGGGGGGTGGAGACGGGAAAAACAAGGGGAAGAGTTATGCAGAGGTTTACGGAGTAGAAAAGGCAACAGAAAAAGCTGAAGAGCTGAGAGAAAAGGCTAAGGAAGAATTGGATGGATTTGAGAAGTACGGGGAGCGAGTCTTTCCTCTCTACAGTTTTGTGGATTATGCATTTGATAGAAGCTTCAGTGTTGATAATGCCAGTGGATAA 1029 0.484 MAPFAIATLSSSHICHLPKPAKLKLPIRCSAASSSPSFFSTRSKASDFDLRTYWASLMVQINHKLDEAVPVQFPPQIYEAMRYSVLAKGAKRAPPVMCISACELFGGNRLAAFPTACALEMVHAASLIHDDLPCMDDSPSRRGQPSNHTIYGVDMAILAGDALFPLGFRHIVSQTPSDLVPEPNLLRVIAEMARSVGSTGMAAGQFLDLEGGPNAVEFIQEKKFGEMGECSAVCGGLLAGAEDDEIERLRRYGKAVGVLYAVVDDILEERLKAEGGGDGKNKGKSYAEVYGVEKATEKAEELREKAKEELDGFEKYGERVFPLYSFVDYAFDRSFSVDNASG 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01969 342 SUPERFAMILY Terpenoid synthases 52 313 IPR008949 -
Spst3g01969 342 Pfam Polyprenyl synthetase 76 306 IPR000092 GO:0008299
Spst3g01969 342 FunFam Geranylgeranyl diphosphate synthase 47 335 - -
Spst3g01969 342 Coils Coil 292 316 - -
Spst3g01969 342 ProSitePatterns Polyprenyl synthases signature 1. 127 143 IPR033749 -
Spst3g01969 342 CDD Trans_IPPS_HT 74 333 IPR000092 GO:0008299
Spst3g01969 342 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 10 333 - -
Spst3g01969 342 SFLD Isoprenoid Synthase Type I 78 321 - -
Spst3g01969 342 Gene3D Farnesyl Diphosphate Synthase 47 342 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01969 Spst-Chr3 49140022 49141471 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01969 K13789 - gmx:100788186 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01969 3 49140022 49141471 Spst3g01969 3 49140022 49141471 ECH