Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0258 ATGGAGAAGAACCAGGGCAGCAGCAGCAGCAAAAGCAGCGGTCCCCAAAGGCCTTCTCAAAGGAAGATGATTGGAGCCAAAGCGATGCGAATCAACGAAGATGAGGGCGCTCGCCTTGTCGGCAGCATAGTCGAAAAGGGCATTTCCGGTAAGCCTCCTGCTCCCTCTTCCGCTCCTCAGCCCACTGTTCTCCCTTTTCCGGTCGCACGGCACCGCTCTCACGGTCCGCATTGGAGTCCATTTGGCAGTAAGATGGGTGGTGGGAATGATAAAAAGGGTGCTGACAATAGTGATAGTGATGATGGAGAAGATATGGATCTTACTGGTTTTGATCAAATAGCTGCTTTTGCTAATCCTATAGAAAGGAAACAGAAGAAGGGTTTGGATTTGAGCAACTGGAGAGAGCTAGTCCCTAATGATAATTCTCTTCTTCCTGCTGAAAAGAAAGATAAGGTTTTATTAGCAGAACTTAAGGAGCAAAACAACAAGGGCAAAACAACTGAAAATGCAGACAAGAGAAAGATGTCTTCTTACGCAGCATTAGCTGATGCTGATGTGCTTAATCCTAAAGAAATGAATGTAGAATCAGGATTAAATTCTGTTGCTGCCAATATGGAATTAGATAAATTGGATCCAGTGCCTGATATTGCAAGAGCACAACTTGAGATAGTAGAAAGTATGAGGCCTAGACTAGTAGAGGTGCAAAAGAATCAAGGGCAAGTGAATATGGAGGAGCAATCACATATGGTTCCTGGGTCAGAAAATTTTGGAATTGACCAAGGATCCATGACTCTTGAGAGTCAAATTGATGCTGAAAATCGTGCACAGTTGGAGAGAATGTCACATGAAGAGATTGCAGAAGCACAGGCTGAGATAATGGAGAAGATGAACCCCACGTTACTGAAGATGCTAAAAAAACGGGGCCAAGACAAACTGAAGAAGCAAAAATGCTCAGGGTCAGATCTGGCTACCAATGGCCAATTGCATAATTTACAAGATGAGAATCAGTTGACACAAGACACAAAAGGTTTCTCAGTCGTGGAGAGTGATGATTCTCATATGGTGACAGAAACAGCCTCAAAAGATGCACAGAGGGGACAAGATAATGTTGCTTTGCAGAATTCTGGTCCAGGCAACAGCGGTTTGTGGAATGCTTGGAGTGAGAGAGTTGAGGCTGTCAGGGATTTAAGGTTTTCTTGGGATGGAACTGTTATTGAAAATGATTTTGGCCAGGTATCCAAGACTGATAACAATTCTGTTCGTAGTGGGTATAATGCTGATAATGTTACTGAACGAGACTTCCTCCGAACCGAGGGAGACCCTGGTGCAGCAGGTTACACAATTAAAGAAGCTCTAGCACTGGCTAGGAGCATGGTGCCAGGACAACGGGCCCTTGCATATCATCTCCTTGCGTCTGTGCTGTATAAGGCATTGGACAATATTCACCGACATCAGGTTGGGTATACCATGAGAAGTGTTAATAACAGCGGTGTGTTTATTGACTGGGAGGCAGTTTGGGCTTATGCACTAGGCCCAGAACCAGAGCTTGTTTTAGCACTGAGGATGTCTCTTGATGATAACCACAATTCTGTGGTTTTGGCTTGTGCCAAAGTTATTCAGTGCGTACTGAGCTGTGATATGAATGAGTACTTTGTTGATGTCTCGGAGAGACTAGCAACTTGCGAGAAAGTTGTATGTACTGCCCCGGTGTTCCGAAGTAGACCAGAGATTGAGCTTGGTTTCCTTCATGGTGGATTTTGGAAATACAACACCAAACCTTCTAATATTTTTCCTTTAAGTGAGGATATCATGGATGCCAAGAGTGAAGAAAAACTCACCATTCAGGATGATATTGTTGTTGCTGGACAAGATTTTGCTGCAGGTTTGGTTAGGATGGGAATCCTTCCTAGGATTCGTTATCTGTTGGAGACCGATCCTACAGTAGCTTTGGAAGAATGCATGATTTCTATACTTATTGCAATAGCAAGGCATTCCCCAACATGTGCAAATGCAATTATAAAGTGTGAAAGGCTTGTTCAGACGGTTGTTGGCAGATTTGCTGAAAAGGACAAGATGGGAGTCTATCCTTCTAAGATAAAGTCAGTCACTCTCTTGAAGGTGTTGGCTCAATCTGACAAGAAGAATTGTATAGAGTTCATAAAGAGTGGGATTTTCCAGGATGCAACTTTGAATTTGTCTCAATGTCCATTGTCCCTCGATCAGTGGATAAAATCAGGGAAAGAAAACTGTAAACATGCGTCAGCTTTGATGGTTGAACAACTACGCTTTTGGAAGGTCTGCATTCAATATGGATATTGTGTATCTTACTTTGGAGATTTTTTCCCTGCCATGCACCTGTGGTTGAATCCACCTACATTTGAAAAACTCATTGAGAACAATGTTCTTAATGAATTTGCTGCCATCACCACAGAAGCATACCTTGTTCTGGAGTCTCTGGCTAGAAGACTTTCAAATTTTAGTTCACAGAAGCATATATCAGAGCTTGTGGATGATGACAAAGAGACCTGGTCTTGGAGCCATGTGGGTCCTATAGTCAATATAGCTTTGAAGTGGATGGCTTTCAAAACCAATCCAGACATTTCTAGATTCTTTGACCAACAAAAAGGAATTGAGAGCAATTCTGTTCACAAAGATTTGTCAATGAGACCCTTGTTATGGGTGATTTCAGCTACCATGCACATGCTTTCTAGTGTGCTCAAAAGAGTGACCCCAGAAGATACCATCAGCCTGCCTGAAAGTGGTGGGCTCCTGCCAGGGCTGCCTGAATTTGTCTCCAAAATTGGACTAGAAGTAATTAATAATTCGTTTCTGAGCTTCCCAGGTGTGAATGACAAAGAATATGGAACTGATCCTTCAGCAGGTTGCTCTTTCATTGAGGAGCTGTGTCATTTGAGACATCATGGTGATTATGAAATATCCTTAGGTTCTACTTGTTGCCTTCATGGACTAGTCCAGCAGGTTGTTTCCCTTGATAACTTGATCCAGCTGGCTAAGACTGAGATACAAACTCCATCTTTCCAAGGACACAGTTTCGCAAAAGAGGGGAAAGTACTTGAAGATGGGGTACTCAAATGGTCACTAATTGAATTGAAAACTGGGCTAATTACTTTCATGAAGCTAGTTACTTCAGAGTGGCATTATTTGCAGTCTATTGAGATATTTGGAAGAGGAGGTCCAGCTCCAGGAGTTGGACTTGGTTGGGGTGCCTCTGGTGGAGGGTTTTGGTCCAAAACTGTTTTGTTGGCACAAACAGATGCAGAATTGCTCATTCACTTGCTTGAAATCTTTCCGTTTTTGTTTTCTGAAGATATACCTTTGGATGAGGACATGACATTTACCATTCAAAGGATCAACTCTGCTTTGGAAGTATGTTTAACTTTAGGACCAAGGAATAGAGTGACCATGGAGAAGGCATTGGATATCTTGCTCCAAGTCCCTGTTCTAAAGTACCTTAATCTCTGTATTTGCCGTTTTCTTCACCTTAATAAGGAAATTAAACAATTTGGTTGGGTATATCAAGAAGAGGACTTTCTGATCTTCAGTAAGATGTTAGCTTCTCACTTCAGAAAGAGATGGCTGTGTGTAAAAAAGAAGTTTAAAGCAGTGGAAAGCAAGAGTTCTTCTGGCCAAAAAGCATCAACTAAGGGTAGTGAATCTCTGGACACCATTCCCGAGGACATGGACATATCAAATACGACCATTCAAGATCATGACTGCCCTTCTTTGTTAGTAGAGTGGGCTCACCAAAGACTTCCACTTCCTGTGCACTGGTTTCTGAGTCCAATATCAACCATCCATGATGGTAAACATACTGAGCCTCCTAGTAATTCTAATATACAAAATTTGGTGAAGAACCCCACTGATTTTCTTGAGGTAGCTAGAGGTGGACTTTTCTTTCTTTTAGGTATTGAGGCAATGTCCTCTTTCCTTTCCTCTGATGTGCCTTCTCCTGTTCGGAGTGTACCAGTAATTTGGAAACTGCATTCTTTGTCTGTGACCTTACTTGATGGAATGAGTGTGCTTGAAGAGAAGAAAAGTAGGGATGTCTATGAAGCTTTGCAGGAGCTGTACGGGCAGCTTCTTGATGAATCAAGGGTTCACAGAAGCACCAAACCTACGCCAGAAACTGGAGAGAAAAACAGCATCGAGTTCCTGAGGTTTCAATCAGATATTCATGAGAGTTACTCCACATTTATCGAAACTCTCGTGGAGCAGTTTGCTGCTATATCTTATGGTGATCTGATCTATGGCCGGCAAGTTGCCATTTATCTACACCGAAGTGTAGAAGCTCCAGTACGGCTTGCTGCTTGGAATGCGCTATCTAATGCCCGTGTCCTTGAACTTCTGCCACCATTGGAGAAGTGTTCTGCTGATGCTGAAGGCTATCTTGAACCAGTTGAGAATAATGAAGGGATTTTGGAAGCTTATGTCAAGTCATGGGTTACTGGTGCTCTGGACCGAGCTGCAACTAGAGGATCAGTTACATTTACACTGGTTTTGCACCACCTTTCATCAGTCATTTTTGAAGATGATGCTGATGTTAAGTTATCACTGAGGAATAAGCTTGCAAAGTCCCTCCTTAGAGACTATTCTCGTAAGCGACAACATGAGGGCCTGATGTTGCAGCTTCTCCGATATAACAAGCAGTTTGCATCCCCACAGCCTGAATGGATGAAGGAGGGCGAAACTGAGAAAAGATTCCGGTTTCTGACAGAAGCTTGTGAAGGAAATGCTTCCCTGTTGAAGGAAGTAGAGAAACTCAAGTCCTCCTTCAGGCAAGACCAATAA 4809 0.4286 MEKNQGSSSSKSSGPQRPSQRKMIGAKAMRINEDEGARLVGSIVEKGISGKPPAPSSAPQPTVLPFPVARHRSHGPHWSPFGSKMGGGNDKKGADNSDSDDGEDMDLTGFDQIAAFANPIERKQKKGLDLSNWRELVPNDNSLLPAEKKDKVLLAELKEQNNKGKTTENADKRKMSSYAALADADVLNPKEMNVESGLNSVAANMELDKLDPVPDIARAQLEIVESMRPRLVEVQKNQGQVNMEEQSHMVPGSENFGIDQGSMTLESQIDAENRAQLERMSHEEIAEAQAEIMEKMNPTLLKMLKKRGQDKLKKQKCSGSDLATNGQLHNLQDENQLTQDTKGFSVVESDDSHMVTETASKDAQRGQDNVALQNSGPGNSGLWNAWSERVEAVRDLRFSWDGTVIENDFGQVSKTDNNSVRSGYNADNVTERDFLRTEGDPGAAGYTIKEALALARSMVPGQRALAYHLLASVLYKALDNIHRHQVGYTMRSVNNSGVFIDWEAVWAYALGPEPELVLALRMSLDDNHNSVVLACAKVIQCVLSCDMNEYFVDVSERLATCEKVVCTAPVFRSRPEIELGFLHGGFWKYNTKPSNIFPLSEDIMDAKSEEKLTIQDDIVVAGQDFAAGLVRMGILPRIRYLLETDPTVALEECMISILIAIARHSPTCANAIIKCERLVQTVVGRFAEKDKMGVYPSKIKSVTLLKVLAQSDKKNCIEFIKSGIFQDATLNLSQCPLSLDQWIKSGKENCKHASALMVEQLRFWKVCIQYGYCVSYFGDFFPAMHLWLNPPTFEKLIENNVLNEFAAITTEAYLVLESLARRLSNFSSQKHISELVDDDKETWSWSHVGPIVNIALKWMAFKTNPDISRFFDQQKGIESNSVHKDLSMRPLLWVISATMHMLSSVLKRVTPEDTISLPESGGLLPGLPEFVSKIGLEVINNSFLSFPGVNDKEYGTDPSAGCSFIEELCHLRHHGDYEISLGSTCCLHGLVQQVVSLDNLIQLAKTEIQTPSFQGHSFAKEGKVLEDGVLKWSLIELKTGLITFMKLVTSEWHYLQSIEIFGRGGPAPGVGLGWGASGGGFWSKTVLLAQTDAELLIHLLEIFPFLFSEDIPLDEDMTFTIQRINSALEVCLTLGPRNRVTMEKALDILLQVPVLKYLNLCICRFLHLNKEIKQFGWVYQEEDFLIFSKMLASHFRKRWLCVKKKFKAVESKSSSGQKASTKGSESLDTIPEDMDISNTTIQDHDCPSLLVEWAHQRLPLPVHWFLSPISTIHDGKHTEPPSNSNIQNLVKNPTDFLEVARGGLFFLLGIEAMSSFLSSDVPSPVRSVPVIWKLHSLSVTLLDGMSVLEEKKSRDVYEALQELYGQLLDESRVHRSTKPTPETGEKNSIEFLRFQSDIHESYSTFIETLVEQFAAISYGDLIYGRQVAIYLHRSVEAPVRLAAWNALSNARVLELLPPLEKCSADAEGYLEPVENNEGILEAYVKSWVTGALDRAATRGSVTFTLVLHHLSSVIFEDDADVKLSLRNKLAKSLLRDYSRKRQHEGLMLQLLRYNKQFASPQPEWMKEGETEKRFRFLTEACEGNASLLKEVEKLKSSFRQDQ* 1603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0258 1602 PANTHER TRANSCRIPTIONAL ELONGATION REGULATOR MINIYO 1 1600 - -
Vvi3g0258 1602 SUPERFAMILY ARM repeat 624 727 IPR016024 -
Vvi3g0258 1602 MobiDBLite consensus disorder prediction 1 106 - -
Vvi3g0258 1602 Pfam RPAP1-like, C-terminal 395 477 IPR013929 -
Vvi3g0258 1602 MobiDBLite consensus disorder prediction 1 19 - -
Vvi3g0258 1602 Pfam RPAP1-like, N-terminal 268 311 IPR013930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0258 Vvi-Chr3 2213140 2224945 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0258 K20826 - vvi:100258889 3128.58