Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01470 ATGGCTCCTTTTACAATTGCAACATTGCCATCTTCACACATCTGCCACCTCCGAAAGCCCCCAAACCTTATCCTTCCAATTCGCTGCTCCACGGCAGCTTCTTCTCCTTCCTCGGTTTCTACACGGGCAAAAGCTGCTCACTTTGATCTGAAGACATATTGGACTTCCCTAATGGTGCAGATCAATCAGAAGCTCAATGAAGCTATTCCAGTTCAGTTCCCTCCGCAGATATACGAAGCTATGAGGTATTCAGTCCTTGCCAAAGGTGCCAAGCGAGCCCCACCTGTTATGTGCATCTCTGCTTGTGAACTCTTTGGGGGCAGCCGCCTTGCTGCCTTTCCCACTGCCTGTGCCCTTGAAATGGTTCATGCGGCTTCATTGATACATGATGATCTTCCCTGCATGGATGACTCCCCATCACGCCGTGGCCAGCCCTCAAACCACACCATCTATGGTGTTGACATGGCAATTCTTGCTGGTGATGCACTCTTTCCCCTTGGATTTCAACACATTGTTTCACATACTCCCTCTGACCTTGTGCCTGAGCCCCACCTCCTTCGCGTGATTGCTGAGATAGCCCGCTCTGTAGGCTCCACTGGAATGGCTGCGGGGCAGTTCCTGGACCTTGAAGGGGGGCCCAATGCAGTTGGATTTATACAAGACAAAAAGTTTGGTGAAATGGGGGAGTGTTCTGCAGTGTGTGGAGGATTGTTGGCTGGTGCTAAAGACGACGAGATAGAGAGACTAAGGAGGTATGGGAGAGCTGTTGGGGTATTGTATGCAGTTGTGGATGATATTTTGGAAGAGAGATTGAAACCTGAGGGAGGCAATAACAGGAAAAATAAGGATAAGAGTTATGTGGAGGTTTATGGGGTGGAGAAAGCAGCAGAGGTGGCTGAAGAGCTTAGAGCAAAAGCTAAGGAAGAATTGGATGGATTTGAGAAGTATGGGGAGCGAGTGTTTCCTCTCTACAGTTTTGTGGATTATGCTGTTGATAGAAGTTTCAATGTTGTTGACGCCACTGGATGA 1029 0.4879 MAPFTIATLPSSHICHLRKPPNLILPIRCSTAASSPSSVSTRAKAAHFDLKTYWTSLMVQINQKLNEAIPVQFPPQIYEAMRYSVLAKGAKRAPPVMCISACELFGGSRLAAFPTACALEMVHAASLIHDDLPCMDDSPSRRGQPSNHTIYGVDMAILAGDALFPLGFQHIVSHTPSDLVPEPHLLRVIAEIARSVGSTGMAAGQFLDLEGGPNAVGFIQDKKFGEMGECSAVCGGLLAGAKDDEIERLRRYGRAVGVLYAVVDDILEERLKPEGGNNRKNKDKSYVEVYGVEKAAEVAEELRAKAKEELDGFEKYGERVFPLYSFVDYAVDRSFNVVDATG* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01470 342 Coils Coil 296 316 - -
Rops2g01470 342 ProSitePatterns Polyprenyl synthases signature 1. 127 143 IPR033749 -
Rops2g01470 342 Gene3D Farnesyl Diphosphate Synthase 47 342 IPR008949 -
Rops2g01470 342 SUPERFAMILY Terpenoid synthases 51 313 IPR008949 -
Rops2g01470 342 FunFam Geranylgeranyl diphosphate synthase 47 335 - -
Rops2g01470 342 SFLD Isoprenoid Synthase Type I 78 323 - -
Rops2g01470 342 CDD Trans_IPPS_HT 74 333 IPR000092 GO:0008299
Rops2g01470 342 Pfam Polyprenyl synthetase 76 274 IPR000092 GO:0008299
Rops2g01470 342 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 7 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01470 Rops-Chr2 21516441 21519145 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01470 K13789 - gmx:100788186 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01470 2 21516441 21519145 Rops2g01470 2 21516441 21519145 ECH