Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08032 ATGTTATTTATTCCCATCAGGTCTCTCTACCTGGGCTCGGTGGCAGAAAAAAGAGGGAGGGCAATTCATATTTCTGATCTGGAGGAGTTACTTAGCGGCTGCTCCCAGTTAGAAGCACTGATTCTGATGTTTGACGTCTCTCTCTTTCTACGTCATAACTTTGCTCGAGTCTGGGCTTCTGCCTCAGAGAAACTCACCTCTCTTGAGATTGGCTACATTTCTTCAGTTACAGTGACCGAACTGCTTAGCCCAAACCTGGGAGCCCATCAGTCCTTAAATCTTGTTCAACCATCCATACTTCCAAGGATTCAGAAATTATGCCTTTCAGTGGACTATATAACTGATGCCATGGTTGCTACAATATCCAGAGGTCTCATCTTTTTGACCCATTTGGATCTTCGGGATGCACCACTGATTGAACCAAGAATTACATTTGACCTAACCAATGCTGGTCTTCAACAAATTAATCAACTTGGGAGATTGAAACATCTGTCATTGATTCGAAGCCAAGAGTTCCTAATTACTTACTTTCGAAGAGTAAATGACCTGGGGTTACTTCTAATGGCTGACAAGTGTGCAAACATGGAAAGCATATGCCTCGGTGGCTTTTGTCGTGTCACAGACACTGGTTTCAAAACTATCCTGCATTCTTGCTCACGCTTATACAAGCTTAAGGTCACTCATGGGACTCAGTTAACTGATCTAGTTTTTCATGATATCTCTGCAACATCCCTTTCTTTAACACATGTGAGCTTAAGATGGTGCAATCTGTTAAGCAACCATGCAGTTTTGAGTTTGGCATCAAACAAGGAACTTAAAGTTCTTGACTTGAGAGATTGCAGGAGCCTTGGGGATGAAGCTCTCCAAGCCATTGGCACTCTTCCAAAACTGAAAATTTTACTATTAGATGGCTCTGATATAACCGATGCAGGACTTTCATACTTACGGCCATCTGTTATTAATTCATTATATGCATTGTCTCTTCGAGGGTGCAAGAGACTTACAGATAAATGCATCACAGTTCTATTTGATGGCTGTGGTATGCTGGAATTGAGAGAACTGGATCTGTCTAATCTTCCTAACCTCTCAGATAATGGAGTTCTGCTGCTGGCAAAAAGTCGGATTCCCCTTTTTGAACTCCGAATGCGACAGTGCCCTCTAATTGGTGATACTTCGATCATGGCATTAGCTTCAATGCTAGTTGATGAGGCAAGATCGCATGGAAGCAGTTTGCGCTTGTTGGATCTTTATAACTGTGGTGGCATTACACAGCTTGCATTTCGCTGGTTAAAGAAACCTTATTTCCCAAGGCTTAAATGGTTGGGAGTGACCGGAAGTGTTAATAGAGATATGGTAGATGCTTTAGCTAGAAGTAGACCTTTCTTGCATGTGGCACACCATGGTGAGGAGCTCGGCGCTGACCCCTATGATATCTCAGATGGTTTATACACACATGATTATGATGAGGTGGATGAATTTGAGCAGTGGCTTCTTGAAGCTGATGTTGATACTGACGATGAAGAATTGGGTGATGCTGAAAATAATGAAGAACTGGTTGTGTAA 1563 0.4242 MLFIPIRSLYLGSVAEKRGRAIHISDLEELLSGCSQLEALILMFDVSLFLRHNFARVWASASEKLTSLEIGYISSVTVTELLSPNLGAHQSLNLVQPSILPRIQKLCLSVDYITDAMVATISRGLIFLTHLDLRDAPLIEPRITFDLTNAGLQQINQLGRLKHLSLIRSQEFLITYFRRVNDLGLLLMADKCANMESICLGGFCRVTDTGFKTILHSCSRLYKLKVTHGTQLTDLVFHDISATSLSLTHVSLRWCNLLSNHAVLSLASNKELKVLDLRDCRSLGDEALQAIGTLPKLKILLLDGSDITDAGLSYLRPSVINSLYALSLRGCKRLTDKCITVLFDGCGMLELRELDLSNLPNLSDNGVLLLAKSRIPLFELRMRQCPLIGDTSIMALASMLVDEARSHGSSLRLLDLYNCGGITQLAFRWLKKPYFPRLKWLGVTGSVNRDMVDALARSRPFLHVAHHGEELGADPYDISDGLYTHDYDEVDEFEQWLLEADVDTDDEELGDAENNEELVV. 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08032 520 Pfam Leucine Rich repeat 269 291 IPR001611 GO:0005515
Seca8g08032 520 SUPERFAMILY RNI-like 25 168 - -
Seca8g08032 520 FunFam F-box/LRR-repeat protein 10 isoform A 3 344 - -
Seca8g08032 520 SUPERFAMILY RNI-like 180 445 - -
Seca8g08032 520 Gene3D Ribonuclease Inhibitor 173 300 IPR032675 -
Seca8g08032 520 Gene3D Ribonuclease Inhibitor 301 473 IPR032675 -
Seca8g08032 520 Gene3D Ribonuclease Inhibitor 8 172 IPR032675 -
Seca8g08032 520 PANTHER UNCHARACTERIZED 240 429 - -
Seca8g08032 520 SMART LRR_CC_2 270 294 IPR006553 -
Seca8g08032 520 SMART LRR_CC_2 320 345 IPR006553 -
Seca8g08032 520 SMART LRR_CC_2 348 373 IPR006553 -
Seca8g08032 520 SMART LRR_CC_2 374 399 IPR006553 -
Seca8g08032 520 SMART LRR_CC_2 244 269 IPR006553 -
Seca8g08032 520 SMART LRR_CC_2 192 217 IPR006553 -
Seca8g08032 520 SMART LRR_CC_2 408 433 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08032 Seca-Chr8 177939815 177943326 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08032 - - pvu:PHAVU_007G016400g 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g08032 8 177939815 177943326 Seca8g08032 8 177939815 177943326 ECH