Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0259 ATGGCGCTCAATCTTCGTCAGAAACAGACTGAATGCATAACTCGAATGTTGAATCTGAATCAACCGGTGAACTCAACCGGAACGGCAAATGAAGAAGTTTACAAGATTTTAATATATGACAAGTATTGCCAAAACATGCTCTCTCCTTTAATTCATGTGAAAGATCTTCGTAAACATGGTGTAACCCTATATTTCCTCATTGATAAAGATCGAAAACCTGTACATGATGTACCTGCCGTCTACTTTGTCCAACCCAATCAGTCCAACATTCAGCGAATTGTTAATGATGCCTCTCACTCACTCTATGATAGCTTCCACCTCAATTTCTCTTCATCAATCCCTCGACCGCTTCTTGAGGATCTTGCATCTGGAATGTTGAATTCAGATTCAATTAATCGAATTTCTAAGGTGCATGATCAGTATTTGGAGTTTGTCACATTGGAAGAGAATTTGTTTTCGTTGGCACAGAAATCGAGCTATGTTCAGTTGAATGATCCCTCAGCAGGGGACCGAGAAATTGAGGAGATAATCGAAAAGATTGTGAGTGGACTGTTTTGTGTTCTTGCCACACTTGCAGTAGTGCCCATTATTCGATGCCCCCGTGGTGGGCCTGCAGAGATGGTTGCTTCTGCTCTGGATCAGCGAATGCGAGATCATTTACTGTCAAAGAATAATTTATTTTCTGAAGGTGGGAATTTTGCGAGTTCATTTCAGCGGCCAATTTTGTGTATATTTGATCGGACTTTTGAGCTATCAGTTGGTATCCAGCATGACTTTAGGTATCGACCACTTGTTCATGATGTGCTGGGTTTGAAGCTTAATAGGTTGAGTGTGCCGGGGGAGAAGGGTGGGATGCGATCATATGAGTTAGACAGTTTTGATCCATTTTGGGTGGCAAATGGGTCATTGGAATTTCCTGAAGTTGCCATTGAGATAGAGACACAACTGAATAAGTATAAGAAGGATGTTGACGAGGTGAATAGACGGACAGGTGGAAATGCTGAGGAGTTTGATGGGCAAGACTTGATTGGCAATACAAAGCATTTAATGAATGCTGTGAACTCACTGCCTGAACTGACTGAGAGGAAGCAGGTGATTGATAAGCATACCAACATTGCAACAGTGTTGTTGGGTGAGATCAAGGAGAGGTCTCTTGATTCTTATGCTAAAAAAGAGTATGACATGATGGTCAGAGGAGGCATTGATCGGAATGAACTTCTAAGTGTCCTAAAAGGTAAGGGGACTAAGATGGACAAACTACGATTTGCAATTATGTTTCTAATTTCTACAGAAAGCATTCCTCAGTCAGAAGTGGAAATGGTGGAAGCAGCCCTCAGAGAGTCTGAAGTTGATACTAGTGCATTTCAGTATGTGAAAAAGATCAAGTCTTTGAATGTCTCATTGGCATCAGCAAATTCTGCCAGCAGAAGTAACATTGTTGATTGGGCTGAGAAACTCTATGGGCAGTCAATTAGTGCTGTTACTGCTGGTGTTAAGAATCTATTATCTAATGATCGGCAGCTAGCATTGACAAGGACAGTAGACGCCTTGATGGAAGGAAGGCCTAATCCTGAAATTGATTCCTATGTTCTGTATGATCCTCGAGCTCCTAAGTCAAGCTCTGGAGCAAGCCATCTGAAAGGACCATTTAAAGAAGCTATTGTATTCATGATTGGTGGTGGTAACTATGTGGAGTATGGAAGCTTGCAAGAGCTTGCACTTCGGCAGCAGCCAGTCAAGCATGTTATATATGGAACAACAGAAATTCTCACAGGGGCAGAGTTTGTAGAGCAGCTTAGTCTGTTAGGACAGAAGATGGGATTAGGTAGTAGCAGTGCTCCTCCAACCCATTAA 1854 0.4202 MALNLRQKQTECITRMLNLNQPVNSTGTANEEVYKILIYDKYCQNMLSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQPNQSNIQRIVNDASHSLYDSFHLNFSSSIPRPLLEDLASGMLNSDSINRISKVHDQYLEFVTLEENLFSLAQKSSYVQLNDPSAGDREIEEIIEKIVSGLFCVLATLAVVPIIRCPRGGPAEMVASALDQRMRDHLLSKNNLFSEGGNFASSFQRPILCIFDRTFELSVGIQHDFRYRPLVHDVLGLKLNRLSVPGEKGGMRSYELDSFDPFWVANGSLEFPEVAIEIETQLNKYKKDVDEVNRRTGGNAEEFDGQDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKEYDMMVRGGIDRNELLSVLKGKGTKMDKLRFAIMFLISTESIPQSEVEMVEAALRESEVDTSAFQYVKKIKSLNVSLASANSASRSNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVDALMEGRPNPEIDSYVLYDPRAPKSSSGASHLKGPFKEAIVFMIGGGNYVEYGSLQELALRQQPVKHVIYGTTEILTGAEFVEQLSLLGQKMGLGSSSAPPTH* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0259 617 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 258 501 IPR043127 -
Vvi3g0259 617 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 17 599 IPR001619 GO:0016192
Vvi3g0259 617 SUPERFAMILY Sec1/munc18-like (SM) proteins 1 605 IPR036045 -
Vvi3g0259 617 Gene3D - 147 601 IPR027482 -
Vvi3g0259 617 Gene3D - 3 136 IPR043154 -
Vvi3g0259 617 Coils Coil 309 329 - -
Vvi3g0259 617 PIRSF VPS45_Sec1 3 611 IPR001619 GO:0016192
Vvi3g0259 617 Gene3D - 383 508 - -
Vvi3g0259 617 Pfam Sec1 family 35 598 IPR001619 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0259 Vvi-Chr3 2225481 2228320 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0259 K19998 - vvi:100253743 1201.04