Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0669 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0670 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0671 . . . . . . . . . . . . . . . . . . . . . . . . . Gso3g0362 . . . . . . . . . . . . . . . . . . . Phco1g01177 . . Pste6g00543 . . . . . . . . . . . . . . .
Pvu10g0672 . . . . . . . Aip02g01770 . . . Apr10g0788 Arst2g01963 . . . . . . . . . . Gma01g01284 Gso1g1067 . . . . . . . . . . . . . Lja3g3376 Mal7g0251 Mepo2g00369 . . Mtr4g0353 . . . . . . . . . . . Tpr4g0668 . Tsu06g00331 . . . . . .
Pvu10g0673 . . Adu02g02052 . Aev02g1902 Ahy12g2117 Ahy2g1848 Aip02g02371 . Amo12g2437 . Apr10g0786 . . . Bva02g00418 . . . Dod07g1609 . . . Gma01g01282 Gso1g1064 . . . . . . . . . . . . . Lja3g3374 Mal7g0262 . Mesa13g05117 . Mtr4g0359 . . . . . . . . . Ssu4g2429 . Tpr4g0669 . Tsu06g00332 . . . . . .
Pvu10g0674 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0675 Acco07g2119 . Adu02g02049 Aed2g1071 Aev02g1898 Ahy12g2114 Ahy2g1845 Aip02g02368 . . . Apr10g0784 . . . Bva02g00416 Car06g02459 . . Dod07g1606 Enph10g0726 Glsi07g2107 . Gma01g01277 Gso1g1060 . . . Lal19g0355 . Lan1g0671 . . . . . . . Lja3g3372 . . Mesa13g05115 Mibi04g2092 Mtr4g0362 . . Prci12g0097 . . . . . . Ssu4g2427 Sto1g2176 Tpr4g0674 . Tsu06g00333 . . . . . .
Pvu10g0676 . . Adu02g02048 Aed2g1070 Aev02g1897 Ahy12g2112 Ahy2g1844 Aip02g02366 . . . Apr10g0783 Arst2g02666 . . . Car06g02462 . . Dod07g1605 . . . Gma01g01276 Gso1g1059 . . . Lal19g0354 . Lan1g0672 . Lapu10g01267 . . . . . Lja3g3371 . . . . . . . . . Pste6g00580 . . . . Ssu4g2426 . . . . . . . . . .
Pvu10g0677 . . Adu02g02047 Aed2g1069 Aev02g1896 Ahy12g2111 Ahy2g1843 . . . . Apr10g0782 Arst2g02664 . . Bva02g00415 . . . Dod07g1604 Enph10g0727 Glsi07g2106 . Gma01g01275 . . . . Lal19g0352 . Lan1g0673 . . . . . . . Lja3g3370 Mal7g0267 . Mesa13g05113 Mibi04g2091 Mtr4g0363 . . Prci12g0098 Psa7g5676 . . . . . Ssu4g2425 Sto1g2177 Tpr4g0675 . . . . . . . .
Pvu10g0678 . . . . . . . Aip02g02365 . . . . Arst2g02663 . . . Car06g02569 . . Dod07g1603 . . . . . . . . . . . . . . . . . . . Mal7g0457 Mepo2g00530 . . Mtr4g0497 . . . Psa7g5674 . . . . . . . Tpr4g0790 . Tsu06g00493 . . . . Vivi5g00477 .
   
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Select Species Gene Chromosome Start End Strand
Tsu Tsu06g00493 Chr06 4164241 4166052 -
Pvu Pvu10g0669 Chr10 12193029 12194072 +
Pvu Pvu10g0670 Chr10 12194550 12196453 +
Pvu Pvu10g0671 Chr10 12198957 12201812 -
Gso Gso3g0362 Chr3 5567637 5593969 +
Phco Phco1g01177 Chr1 17523475 17527198 +
Pste Pste6g00543 Chr6 2019370 2023229 +
Pvu Pvu10g0672 Chr10 12250035 12255104 -
Aip Aip02g01770 Chr02 76812172 76818694 -
Apr Apr10g0788 Chr10 19689779 19696595 +
Arst Arst2g01963 Chr2 63011187 63065971 -
Gma Gma01g01284 Chr01 45534807 45544614 -
Gso Gso1g1067 Chr1 43882150 43892025 -
Lja Lja3g3376 Chr3 66516353 66538529 +
Mal Mal7g0251 Chr7 5814999 5820225 -
Mepo Mepo2g00369 Chr2 3974899 3977958 +
Mtr Mtr4g0353 Chr4 4247214 4254747 -
Tpr Tpr4g0668 Chr4 6154982 6169638 -
Tsu Tsu06g00331 Chr06 2716331 2721556 -
Pvu Pvu10g0673 Chr10 12338162 12343017 -
Adu Adu02g02052 Chr02 83525592 83530159 +
Aev Aev02g1902 Chr02 20875629 20880336 +
Ahy Ahy12g2117 Chr12 106311794 106316505 +
Ahy Ahy2g1848 Chr2 91746823 91751329 +
Aip Aip02g02371 Chr02 96756690 96761269 +
Amo Amo12g2437 Chr12 107025438 107029750 +
Apr Apr10g0786 Chr10 19635446 19639106 +
Bva Bva02g00418 Chr02 5827410 5831781 +
Dod Dod07g1609 Chr07 43428063 43432196 +
Gma Gma01g01282 Chr01 45352673 45357788 +
Gso Gso1g1064 Chr1 43701061 43706800 +
Lja Lja3g3374 Chr3 66507287 66510723 +
Mal Mal7g0262 Chr7 5949369 5952893 -
Mesa Mesa13g05117 Chr13 81699682 81703247 +
Mtr Mtr4g0359 Chr4 4293000 4297195 -
Ssu Ssu4g2429 Chr4 60743079 60748319 +
Tpr Tpr4g0669 Chr4 6172405 6176605 -
Tsu Tsu06g00332 Chr06 2741102 2748786 -
Pvu Pvu10g0674 Chr10 12482068 12484081 +
Pvu Pvu10g0675 Chr10 12575414 12586411 -
Acco Acco07g2119 Chr07 38992921 38996008 +
Adu Adu02g02049 Chr02 83453205 83457128 +
Aed Aed2g1071 Chr2 8635669 8640660 +
Aev Aev02g1898 Chr02 20832012 20835163 +
Ahy Ahy12g2114 Chr12 106217102 106221794 +
Ahy Ahy2g1845 Chr2 91666821 91671540 +
Aip Aip02g02368 Chr02 96666447 96671194 +
Apr Apr10g0784 Chr10 19521438 19525365 +
Bva Bva02g00416 Chr02 5803340 5806160 +
Car Car06g02459 Chr06 27495135 27500141 -
Dod Dod07g1606 Chr07 43367997 43372048 +
Enph Enph10g0726 Chr10 9905923 9910777 -
Glsi Glsi07g2107 Chr07 65409957 65413282 +
Gma Gma01g01277 Chr01 45234728 45237994 +
Gso Gso1g1060 Chr1 43583960 43587820 +
Lal Lal19g0355 Chr19 3886591 3892823 -
Lan Lan1g0671 Chr1 13531162 13536826 +
Lja Lja3g3372 Chr3 66439030 66446488 +
Mesa Mesa13g05115 Chr13 81644766 81650461 +
Mibi Mibi04g2092 Chr04 52459176 52462103 +
Mtr Mtr4g0362 Chr4 4330545 4336804 -
Prci Prci12g0097 Chr12 798779 802451 -
Ssu Ssu4g2427 Chr4 60615821 60619918 +
Sto Sto1g2176 Chr1 29954465 29957814 -
Tpr Tpr4g0674 Chr4 6227670 6231468 -
Tsu Tsu06g00333 Chr06 2768008 2777216 -
Pvu Pvu10g0676 Chr10 12595749 12599098 +
Adu Adu02g02048 Chr02 83433348 83433908 -
Aed Aed2g1070 Chr2 8630465 8631217 -
Aev Aev02g1897 Chr02 20824995 20825747 -
Ahy Ahy12g2112 Chr12 106151773 106154671 -
Ahy Ahy2g1844 Chr2 91648094 91652558 -
Aip Aip02g02366 Chr02 96606550 96607302 -
Apr Apr10g0783 Chr10 19513605 19518533 -
Arst Arst2g02666 Chr2 82881878 82884884 -
Car Car06g02462 Chr06 27544383 27547438 +
Dod Dod07g1605 Chr07 43358389 43359511 -
Gma Gma01g01276 Chr01 45205244 45205924 -
Gso Gso1g1059 Chr1 43554543 43558444 -
Lal Lal19g0354 Chr19 3882847 3885984 +
Lan Lan1g0672 Chr1 13537132 13543690 -
Lapu Lapu10g01267 Chr10 16809960 16813383 -
Lja Lja3g3371 Chr3 66424423 66428029 -
Pste Pste6g00580 Chr6 2179348 2180100 +
Ssu Ssu4g2426 Chr4 60595303 60596055 -
Pvu Pvu10g0677 Chr10 12751334 12755174 -
Adu Adu02g02047 Chr02 83426822 83432343 +
Aed Aed2g1069 Chr2 8623983 8628128 +
Aev Aev02g1896 Chr02 20818414 20822904 +
Ahy Ahy12g2111 Chr12 106145210 106151139 +
Ahy Ahy2g1843 Chr2 91641627 91647572 +
Apr Apr10g0782 Chr10 19509188 19513057 +
Arst Arst2g02664 Chr2 82875457 82881687 +
Bva Bva02g00415 Chr02 5799463 5801761 +
Dod Dod07g1604 Chr07 43355403 43357308 +
Enph Enph10g0727 Chr10 9911220 9913959 -
Glsi Glsi07g2106 Chr07 65400558 65403713 +
Gma Gma01g01275 Chr01 45199400 45203107 +
Lal Lal19g0352 Chr19 3847084 3858085 -
Lan Lan1g0673 Chr1 13572086 13577502 +
Lja Lja3g3370 Chr3 66421628 66424114 +
Mal Mal7g0267 Chr7 6077950 6083613 -
Mesa Mesa13g05113 Chr13 81626434 81629127 +
Mibi Mibi04g2091 Chr04 52454120 52457202 +
Mtr Mtr4g0363 Chr4 4338881 4342072 -
Prci Prci12g0098 Chr12 804008 806069 -
Psa Psa7g5676 Chr7 479728454 479737266 -
Ssu Ssu4g2425 Chr4 60587612 60593437 +
Sto Sto1g2177 Chr1 29960910 29964081 -
Tpr Tpr4g0675 Chr4 6232434 6240704 -
Pvu Pvu10g0678 Chr10 12755696 12756935 -
Aip Aip02g02365 Chr02 96599875 96605454 +
Arst Arst2g02663 Chr2 82875457 82881687 +
Car Car06g02569 Chr06 30636227 30640366 +
Dod Dod07g1603 Chr07 43353459 43354532 +
Mal Mal7g0457 Chr7 12033822 12034899 -
Mepo Mepo2g00530 Chr2 6294201 6296294 -
Mtr Mtr4g0497 Chr4 6276365 6278456 -
Psa Psa7g5674 Chr7 479713654 479717409 -
Tpr Tpr4g0790 Chr4 7364136 7365131 -
Tsu Tsu06g00493 Chr06 4164241 4166052 -
Vivi Vivi5g00477 Chr5 8035554 8037963 -
Mepo Mepo2g00369 Chr2 3974899 3977958 +
Mtr Mtr4g0353 Chr4 4247214 4254747 -
Apr Apr10g0788 Chr10 19689779 19696595 +
Arst Arst2g01963 Chr2 63011187 63065971 -