Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2424 ATGCCACCAAAGTCATCCCTCCTCCTCCACCGGATCAACCACTCCGGCACCGCCGCGACCACCACCGTCACCAACCGCCACGACAACACCCTCCTGGTGAAGCCCTTCGCGGCGGTGCCCGACGCTGTGGCTCGCTACCACACCCACTCGGTGGCGCCGAACCAGTGCTGCTCCGCGGTGGCGCAAGAGATCGCCGCCTCGGTCGCCACCGTGTGGTCCGTGGTGCGCCGCTTCGACAACCCGCAGGCCTACAAGCACTTCGTGAAGAGCTGCCACGTCATCGGCGGCGACGGCGACGTCGGCACTCTCCGGGAGGTCCGCGTCATCTCCGGCCTCCCCGCGGCGCGGAGCACCGAGCGCCTCGAGATCCTCGACGAGGAGCGCCACGTCATCAGCTTCAGCGTCGTCGGCGGGGACCACCGCCTCGCCAACTACCGCTCCTTCACCACCCTGCACGCCGCCGCCGGCGACGGCGCCGGCACGGTGGTCGTGGAGTCCTACGTGGTGGACGTGCCGCCCGGGAACACGCGGGAAGACACGCGCGTGTTCGTGGACACCATCGTAAGGTGCAACCTTCAGTCACTCGCGAAAACTGCAGAGAACTTAACGCGACGAAGAAGCAACAGCAGCGATTACAAGTGCTGTTcctaa 651 0.6651 MPPKSSLLLHRINHSGTAATTTVTNRHDNTLLVKPFAAVPDAVARYHTHSVAPNQCCSAVAQEIAASVATVWSVVRRFDNPQAYKHFVKSCHVIGGDGDVGTLREVRVISGLPAARSTERLEILDEERHVISFSVVGGDHRLANYRSFTTLHAAAGDGAGTVVVESYVVDVPPGNTREDTRVFVDTIVRCNLQSLAKTAENLTRRRSNSSDYKCCS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2424 216 CDD PYR_PYL_RCAR_like 56 200 - -
Ssu4g2424 216 Pfam Polyketide cyclase / dehydrase and lipid transport 57 200 IPR019587 -
Ssu4g2424 216 SUPERFAMILY Bet v1-like 56 198 - -
Ssu4g2424 216 PANTHER ABSCISIC ACID RECEPTOR PYL4-LIKE 27 207 - -
Ssu4g2424 216 PANTHER - 27 207 - -
Ssu4g2424 216 Gene3D - 15 214 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2424 Ssu-Chr4 60564447 60565097 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2424 K14496 - gmx:100788199 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3077 6 70245936 70246577 Ssu4g2424 4 60564447 60565097 ECH
Ssu3g1052 3 24652630 24653196 Ssu4g2424 4 60564447 60565097 ECH
Ssu4g2424 4 60564447 60565097 Ssu6g3077 6 70245936 70246577 ECH
Ssu4g2424 4 60564447 60565097 Ssu4g2424 4 60564447 60565097 ECH