Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2418 ATGAATCACACAAGTAGTAATCAAACTCTGATTCTTCCCTATCATTTCCAAAACACAAAGATGAAAATGCCtccttttcttcattcttttcctCCTCGTTCATTCTTCTTCTGTTGCTTCCTCCTCCTTCCCCTTTTGCTCTTGCTCTTGCTCTTGGTAGcaccttcttcatcttcttcttcaggTGCTCCAAATGACAAGGTCACCATGTCACTCTACTATGAAAGTTTATGTCCCTATTGTGCTGATTTCATAGTTAACCATCTTGTGAGGCTCTTCCGAACGGGTCTCATCTCCAATGTAAACCTCAGAATGATCCCTTGGGGCAACGCTTGGATTGCACCTGATGGAACTGTCATTTGTCATGTTACATCTCTTCCATTTTCCATGCTTTTCACATTGTTCTctgtttttcttcttgaaaGTTGA 429 0.3566 MNHTSSNQTLILPYHFQNTKMKMPPFLHSFPPRSFFFCCFLLLPLLLLLLLLVAPSSSSSSGAPNDKVTMSLYYESLCPYCADFIVNHLVRLFRTGLISNVNLRMIPWGNAWIAPDGTVICHVTSLPFSMLFTLFSVFLLES 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2418 142 PANTHER GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT 40 122 IPR004911 GO:0016671
Ssu4g2418 142 SUPERFAMILY Thioredoxin-like 37 108 IPR036249 -
Ssu4g2418 142 Pfam Gamma interferon inducible lysosomal thiol reductase (GILT) 70 117 IPR004911 GO:0016671
Ssu4g2418 142 PANTHER GAMMA INTERFERON RESPONSIVE LYSOSOMAL THIOL (GILT) REDUCTASE FAMILY PROTEIN 40 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2418 Ssu-Chr4 60377327 60377755 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2418 K08059 - gmx:100800176 116.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2418 4 60377327 60377755 Ssu4g2418 4 60377327 60377755 ECH
Ssu3g1062 3 24891169 24893356 Ssu4g2418 4 60377327 60377755 PCT