Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu10g0685 | ATGAACGAAAGAGGAACACCTTTCTTCTTCTCCAATTTCCCCTTTGATCTTAAAGAGTCTGATTTGTGGAAAATTTTCCGAAGATGGGGAAGGGTGAGTGATGTTTTCATATCTAGGAGATTAAATATAAAGAAGCAAAGGTTTGGATTTGTAAGATTTCTGGGAGTACAGAAT | 174 | 0.3621 | MNERGTPFFFSNFPFDLKESDLWKIFRRWGRVSDVFISRRLNIKKQRFGFVRFLGVQN | 58 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu10g0685 | 58 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 11 | 53 | IPR000504 | GO:0003723 | |
| Pvu10g0685 | 58 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 55 | IPR035979 | GO:0003676 | |
| Pvu10g0685 | 58 | CDD | RRM_SF | 9 | 53 | - | - | |
| Pvu10g0685 | 58 | Gene3D | - | 6 | 57 | IPR012677 | - | |
| Pvu10g0685 | 58 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 58 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu10g0685 | Pvu-Chr10 | 13866881 | 13867054 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu10g0685 | - | K13126 | pvu:PHAVU_010G0660001 | 124.79 |