Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2423 ATGGATCAGATATTCAACAAGGTCGGATCCTATTGGTTCAACCAGAAAGCCACCAAGGAGCTCAATTCCGTCGGTGACGACATCAATTCGCTGTCAAACAGTATTGAAGGAGGAACCAAATGGTTggtcaacaaaataaaagGAAAGATGCAAAAGCCATTACCAGAGTTGCTAAAGGAGTACGATCTACCAATAGGAATCTTTCCTCGTGATGCAACAAACTATGAATTCAATGAAGAGACAGGAAAGCTCATCGTCTACATTCCTCAAGTATGTGAAGTAGGCTACAAGGATTCGTCAGTGTTGCGTTTCTTCACCACGGTGACCGGTTATCTGGAGAAGGGAAAGCTAGCAGACATAGAAGGAATGAAGACAAAAGTGTTGATCTGGGTGAAAGTGACTACCATTTCATCGGAGGGATCGAAGCTCCATGTGACAGCTGGCATGAAGAAAACAAGGAGTAGGGAAGCATATGAGGTTACAAGAGATGGTGTATGCGTAGATAAGTTCTAG 513 0.423 MDQIFNKVGSYWFNQKATKELNSVGDDINSLSNSIEGGTKWLVNKIKGKMQKPLPELLKEYDLPIGIFPRDATNYEFNEETGKLIVYIPQVCEVGYKDSSVLRFFTTVTGYLEKGKLADIEGMKTKVLIWVKVTTISSEGSKLHVTAGMKKTRSREAYEVTRDGVCVDKF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2423 170 Pfam Protein of unknown function, DUF538 56 159 IPR007493 -
Ssu4g2423 170 SUPERFAMILY At5g01610-like 2 169 IPR036758 -
Ssu4g2423 170 Gene3D - 32 170 IPR036758 -
Ssu4g2423 170 PANTHER DUF538 FAMILY PROTEIN 3 170 - -
Ssu4g2423 170 PANTHER T31J12.3 PROTEIN-RELATED 3 170 IPR007493 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2423 Ssu-Chr4 60532241 60535686 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2423 - - gmx:100500143 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2423 4 60532241 60535686 Ssu4g2423 4 60532241 60535686 ECH
Ssu3g1053 3 24680310 24683510 Ssu4g2423 4 60532241 60535686 PCT