Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2422 ATGCTCGATTGTGACGTGGAGGGGATATCTCCACAGATTCCACATTCACACTGGATAGGCCACGAGCACGCCACACGCCAGTGCTCGAGAACAAATCTCAGCCCTCCACGCGTACTTTCATCCGACGGTCCAAAAAGGAATCCCGTTCTTTCTAAATTCTCAAAATGCCCCTCGCCACCACTACTTATATCGCCTTTGTCCCTTCCCTTTGCAGCACGGCCTTCAGAGTTTAGAGCCGCCATTGACATCTTCTTCATTGCTCTTCTTGCAGCATACCCACTTCAAGATTCTTTCCAAATGGCCTTTTCTTGCACCAAAGCTTCAGCCTTTTCTCTCTCACCCATTGTGGGGGATGCTCCAAAGAAGCTCACTTTTAGTTCCTCTGTGAGCTTtgttctctcttcttctttcagTCCTAAGGTTGGGGGACACAGGATCTTGAGGGTGTGTGCTGCTTCAAATGCACCAGCACCACTCGCTCGGGTCATATTTGAGCCCTTTGAAGAGCTCAAAAGAGGTGATCTTGCCGTTCCAATAGCCCAAAATGTTTCCTTGGCTCGCCAGAACTATGCAGATGAATCTGAAGCCGCAATCAACGAGCAGATCAATGTAGAATACAACGCTTCCTATGTGTACCACTCCTTGTTTGCATACTTCGACAGAGATGACATAGCTCTCAAGGGACTTGCCAAGTTCTTCAAGGAATCAAGTGAAGAAGAAAGGGAGCATGCTGAGAAGCTTATAAAGTATCAGAATATTCGTGGTGGACGAGTGGTGCTGTACCCCATCACAAGTCCTCCCTCAGAATTTGAGCATGCGGAAAAAGGGGATGCCTTGTATGCCATGGAAATAGCTTTGTCTTTGGAGAAGTTGGTAAATGAGAAACTTCTGCATGTCCACAGTGTGGCAGACTGTAATAATGATCCTCAGTTGGCAGACTACATTGAGAGCGAGTTTTTGTATGAGCAGGTTAAATCAATTAAGAAGATTGCAGAGTATGTGACTCAACTGAGATTAGTTGGAAAGGGCCATGGTATGCATATATCCTTAGCCccagtaattttgtcattgcATTTTACTTGCTATTGGTCCACTAGCATATTGTCATGTCATGTATCTATTTGGTCCActaacaaattatcatgtaacTATTATGCATTAGCATCACCTTGGTTACTCTCTCCCTCCCttagagaaagaaatgaaagaagggGGAAATAG 1221 0.4275 MLDCDVEGISPQIPHSHWIGHEHATRQCSRTNLSPPRVLSSDGPKRNPVLSKFSKCPSPPLLISPLSLPFAARPSEFRAAIDIFFIALLAAYPLQDSFQMAFSCTKASAFSLSPIVGDAPKKLTFSSSVSFVLSSSFSPKVGGHRILRVCAASNAPAPLARVIFEPFEELKRGDLAVPIAQNVSLARQNYADESEAAINEQINVEYNASYVYHSLFAYFDRDDIALKGLAKFFKESSEEEREHAEKLIKYQNIRGGRVVLYPITSPPSEFEHAEKGDALYAMEIALSLEKLVNEKLLHVHSVADCNNDPQLADYIESEFLYEQVKSIKKIAEYVTQLRLVGKGHGMHISLAPVILSLHFTCYWSTSILSCHVSIWSTNKLSCNYYALASPWLLSPSLRERNERRGK 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2422 406 ProSitePatterns Ferritin iron-binding regions signature 2. 308 328 IPR014034 -
Ssu4g2422 406 PANTHER FERRITIN-2, CHLOROPLASTIC 100 346 - -
Ssu4g2422 406 SUPERFAMILY Ferritin-like 180 345 IPR009078 -
Ssu4g2422 406 ProSitePatterns Ferritin iron-binding regions signature 1. 239 257 IPR014034 -
Ssu4g2422 406 ProSiteProfiles Ferritin-like diiron domain profile. 188 341 IPR009040 -
Ssu4g2422 406 CDD Euk_Ferritin 192 345 - -
Ssu4g2422 406 Gene3D - 158 349 IPR012347 -
Ssu4g2422 406 PANTHER FERRITIN 100 346 IPR001519 GO:0006826|GO:0006879|GO:0008199
Ssu4g2422 406 Pfam Ferritin-like domain 196 339 IPR008331 GO:0008199
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2422 Ssu-Chr4 60438472 60507079 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2422 K00522 - gmx:100778273 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3073 6 70160687 70162962 Ssu4g2422 4 60438472 60507079 ECH
Ssu4g2422 4 60438472 60507079 Ssu4g2422 4 60438472 60507079 ECH
Ssu4g2422 4 60438472 60507079 Ssu6g2688 6 62487329 62489657 ECH
Ssu3g1057 3 24766718 24769363 Ssu4g2422 4 60438472 60507079 PCT