Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0380 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0381 . . . . . . . Aed5g1089 Aev10g2361 . Ahy18g1219 . Aip08g01295 . . . . . . Apr5g0060 . . . . . . Bva09g00786 Bva07g01830 . . . Cca04g01365 . . Dod10g1073 . . . . . Gma06g02335 . . . Gso6g2126 . . . . Lal1g1662 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu3g1883 . . . . . . . . . . . . . . . . . . . .
Vvi19g0382 . . . . Adu10g00363 . Aed1g0673 Aed5g1088 . . . . Aip08g01293 . . . Amo18g1407 . Apr2g0336 . Arst10g00473 . Bach7g00727 . Bisa07g0757 . Bva09g00785 Bva07g01831 Car01g02107 Car07g02136 Cca10g01036 Cca04g01363 Dere02g2537 . . . . . Glsi11g2514 . Gma06g02342 Gma12g01337 Gma12g02051 Gma13g02502 . . . . Lal9g0483 . . . . Lal11g1383 . . . . . . Lapu6g01177 . Lasa1g05088 . . . . . . . . . . Lja3g4472 Mal4g1009 . Mepo6g00327 . Mesa5g04329 . . . Mtr2g2711 . . . Phco11g00316 . . . Psa5g5692 . . . Pte19g00878 Pte2g00764 . . Pumo2g00931 . Pvu6g2010 . Rops11g00453 . Seca6g04997 . Spst6g00680 . Ssu8g1071 Ssu3g1884 Sto7g0331 . Tpr7g3618 . Trre3g00358 . Tsu02g04498 . Vian6g01860 . Vifa1g10595 . Vimu2g00550 . Viun6g02908 . Vivi1g08374 . . .
Vvi19g0383 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0384 . . . . . . . Aed10g1975 . . . . . . . . . . . . . . . . . . . . . . . Cca09g01346 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra7g1739
Vvi19g0385 . . . . . . . Aed5g1087 . . . . . . . . . . . . . . . . . . . . . . . Cca04g01362 . . . . . . . . . Gma12g01333 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr8g1716 . . . . . . . Psa5g6150 . . . . . . . . . . . . . . . . . Ssu3g1887 . . . . . . . . . . . . . . . . . . . Vra2g1255
Vvi19g0386 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0387 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0388 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0389 . . . . . . . . . . . . . . . . . . Apr2g0334 . . . . . . . . . . . . . . . . . . . . . Gma06g02343 . . . Gso6g2129 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2711 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Adu Adu10g00363 Chr10 4167124 4167713 -
Arst Arst10g00473 Chr10 3816618 3817531 -
Bach Bach7g00727 Chr7 18238495 18238836 -
Bisa Bisa07g0757 Chr07 20014213 20014635 +
Dere Dere02g2537 Chr02 27954033 27954374 +
Glsi Glsi11g2514 Chr11 17805091 17805432 -
Lapu Lapu6g01177 Chr6 11652375 11653100 +
Lasa Lasa1g05088 Chr1 823317130 823317480 -
Mepo Mepo6g00327 Chr6 3409277 3409763 +
Mesa Mesa5g04329 Chr5 72535811 72536167 -
Phco Phco11g00316 Chr11 2048017 2048625 +
Pte Pte19g00878 Chr19 7430011 7431057 -
Pte Pte2g00764 Chr2 6485129 6485928 +
Pumo Pumo2g00931 Chr2 13962850 13963669 -
Pvu Pvu6g2010 Chr6 30094642 30095438 -
Rops Rops11g00453 Chr11 6139583 6140220 +
Seca Seca6g04997 Chr6 117304196 117304540 -
Spst Spst6g00680 Chr6 6147690 6148034 +
Trre Trre3g00358 Chr3 2325735 2326091 +
Vian Vian6g01860 Chr6 35961396 35961740 -
Vifa Vifa1g10595 Chr1 1784413686 1784414042 -
Vimu Vimu2g00550 Chr2 3206610 3206954 +
Viun Viun6g02908 Chr6 32312507 32313550 -
Vivi Vivi1g08374 Chr1 239395150 239395686 -
Aed Aed5g1089 Chr5 9217372 9218412 +
Cca Cca04g01365 Chr04 17805390 17806424 +
Gma Gma06g02335 Chr06 44362469 44364495 -
Ssu Ssu3g1883 Chr3 58568503 58569591 -
Psa Psa5g6150 Chr5 526571247 526573634 +
Vvi Vvi19g0380 Chr19 4190151 4190744 +
Vvi Vvi19g0381 Chr19 4194626 4195896 -
Aed Aed5g1089 Chr5 9217372 9218412 +
Aev Aev10g2361 Chr10 23348193 23348991 +
Ahy Ahy18g1219 Chr18 20866777 20868208 +
Aip Aip08g01295 Chr08 19895416 19896812 +
Apr Apr5g0060 Chr5 577926 579265 +
Bva Bva09g00786 Chr09 4050248 4051668 +
Bva Bva07g01830 Chr07 16581939 16583373 -
Cca Cca04g01365 Chr04 17805390 17806424 +
Dod Dod10g1073 Chr10 29045418 29046582 -
Gma Gma06g02335 Chr06 44362469 44364495 -
Gso Gso6g2126 Chr6 40309637 40311702 -
Lal Lal1g1662 Chr1 19022924 19025162 -
Ssu Ssu3g1883 Chr3 58568503 58569591 -
Vvi Vvi19g0382 Chr19 4197164 4200016 -
Adu Adu10g00363 Chr10 4167124 4167713 -
Aed Aed1g0673 Chr1 8010657 8011043 -
Aed Aed5g1088 Chr5 9169995 9171193 +
Aip Aip08g01293 Chr08 19851315 19852009 +
Amo Amo18g1407 Chr18 26309630 26310136 +
Apr Apr2g0336 Chr2 4008813 4009364 +
Arst Arst10g00473 Chr10 3816618 3817531 -
Bach Bach7g00727 Chr7 18238495 18238836 -
Bisa Bisa07g0757 Chr07 20014213 20014635 +
Bva Bva09g00785 Chr09 4044833 4045737 +
Bva Bva07g01831 Chr07 16586261 16586982 -
Car Car01g02107 Chr01 46553763 46554559 -
Car Car07g02136 Chr07 27653700 27654610 +
Cca Cca10g01036 Chr10 12686836 12687746 +
Cca Cca04g01363 Chr04 17752972 17754408 +
Dere Dere02g2537 Chr02 27954033 27954374 +
Glsi Glsi11g2514 Chr11 17805091 17805432 -
Gma Gma06g02342 Chr06 44475900 44476511 -
Gma Gma12g01337 Chr12 20358743 20359483 +
Gma Gma12g02051 Chr12 41159558 41160286 -
Gma Gma13g02502 Chr13 39919351 39920119 -
Lal Lal9g0483 Chr9 3245413 3245718 +
Lal Lal11g1383 Chr11 17343001 17343357 -
Lapu Lapu6g01177 Chr6 11652375 11653100 +
Lasa Lasa1g05088 Chr1 823317130 823317480 -
Lja Lja3g4472 Chr3 86341596 86342350 -
Mal Mal4g1009 Chr4 13909834 13910178 +
Mepo Mepo6g00327 Chr6 3409277 3409763 +
Mesa Mesa5g04329 Chr5 72535811 72536167 -
Mtr Mtr2g2711 Chr2 40221375 40222272 -
Phco Phco11g00316 Chr11 2048017 2048625 +
Psa Psa5g5692 Chr5 495159857 495161238 +
Pte Pte19g00878 Chr19 7430011 7431057 -
Pte Pte2g00764 Chr2 6485129 6485928 +
Pumo Pumo2g00931 Chr2 13962850 13963669 -
Pvu Pvu6g2010 Chr6 30094642 30095438 -
Rops Rops11g00453 Chr11 6139583 6140220 +
Seca Seca6g04997 Chr6 117304196 117304540 -
Spst Spst6g00680 Chr6 6147690 6148034 +
Ssu Ssu8g1071 Chr8 18678946 18679290 +
Ssu Ssu3g1884 Chr3 58606063 58606395 -
Sto Sto7g0331 Chr7 2365651 2365950 -
Tpr Tpr7g3618 Chr7 44824188 44824758 -
Trre Trre3g00358 Chr3 2325735 2326091 +
Tsu Tsu02g04498 Chr02 53918275 53920267 +
Vian Vian6g01860 Chr6 35961396 35961740 -
Vifa Vifa1g10595 Chr1 1784413686 1784414042 -
Vimu Vimu2g00550 Chr2 3206610 3206954 +
Viun Viun6g02908 Chr6 32312507 32313550 -
Vivi Vivi1g08374 Chr1 239395150 239395686 -
Vvi Vvi19g0383 Chr19 4210025 4210501 -
Vvi Vvi19g0384 Chr19 4226619 4228994 +
Aed Aed10g1975 Chr10 23917496 23922753 +
Cca Cca09g01346 Chr09 36492626 36496521 +
Vra Vra7g1739 Chr7 36117730 36121799 -
Vvi Vvi19g0385 Chr19 4230991 4232990 +
Aed Aed5g1087 Chr5 9139669 9153760 -
Cca Cca04g01362 Chr04 17716179 17720660 +
Gma Gma12g01333 Chr12 20040055 20044174 +
Mtr Mtr8g1716 Chr8 25414252 25420509 +
Psa Psa5g6150 Chr5 526571247 526573634 +
Ssu Ssu3g1887 Chr3 58739863 58743560 +
Vra Vra2g1255 Chr2 18052588 18056456 -
Vvi Vvi19g0386 Chr19 4233986 4234385 +
Vvi Vvi19g0387 Chr19 4271944 4272189 +
Vvi Vvi19g0388 Chr19 4272270 4272695 -
Vvi Vvi19g0389 Chr19 4276288 4280440 +
Apr Apr2g0334 Chr2 3979914 3983266 -
Gma Gma06g02343 Chr06 44556065 44560108 +
Gso Gso6g2129 Chr6 40534827 40538798 +
Gma Gma12g02051 Chr12 41159558 41160286 -