Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1383 ATGGCTTCAAAAAACTTACTAGCCCAGTTTCAAGATTATTTGCCTGTTATGGCCAATAAGCTAGGTGGGGATGGTTTAATAGATGAGTTATGCAATGGGTTTAATCTGTTGATGGATTCTGAAAAAGGGGTCATCACTTTTGAAAGTCTTAAGAGGAATTCAGCTTTGCTTGGTCTTCAAGATTTGAGTGATCAAGATCTTCAATCCATGGTTGTAGAAGGTGATTTTGATGGTGATGGTGCTCTCAATCAGTTAGAGTTCTGTGTTTTGATGTTTAGATTAAGCCCTGAACTTATGGAAGGGTCTCACTTGTGGTTGGAACAAGCCCTTCAAGGAGAACTCAAAGATTTTTTTTGA 357 0.3838 MASKNLLAQFQDYLPVMANKLGGDGLIDELCNGFNLLMDSEKGVITFESLKRNSALLGLQDLSDQDLQSMVVEGDFDGDGALNQLEFCVLMFRLSPELMEGSHLWLEQALQGELKDFF 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1383 118 Pfam EF-hand domain pair 41 93 IPR002048 GO:0005509
Lal11g1383 118 SUPERFAMILY EF-hand 8 91 IPR011992 -
Lal11g1383 118 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Lal11g1383 118 PANTHER CALCIUM-BINDING PROTEIN KRP1 2 117 - -
Lal11g1383 118 PANTHER CALCIUM-BINDING PROTEIN KIC 2 117 IPR044205 GO:0005509
Lal11g1383 118 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
Lal11g1383 118 Gene3D - 8 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1383 Lal-Chr11 17343001 17343357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1383 4 114 EF-hand Containing Proteins AT5G54490 63.393 1.36e-47 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1383 K24345 - gmx:100500465 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1383 11 17343001 17343357 Lal11g1383 11 17343001 17343357 ECH
Lal11g1383 11 17343001 17343357 Lal9g0483 9 3245413 3245718 PCT
Lal9g0483 9 3245413 3245718 Lal11g1383 11 17343001 17343357 PCT