Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1407 ATGGAATTAGACCATGGTATGGACTTTGAGGACTACTTTCCATACATGATCTCAAGCCTCGGCGCGGAAGGCTTCATCGGCGAGCTCTGCAATGGTTTCAGTCTGCTTATGGACGCGAACAAGGGCTTGATCACGTTCGAGAGCTTGAAGATGAATTGTTGCTTACTAGGTTTGGAGGTGAGGGATGATGATGAGCTCTTGTGCATGTTAATGGAAGGTGATTTGGATGGAGATGGTGCCCTAAACCAAATGGAGTTTTGCATTCTCATGTTTAGGATTAGTCCATGCTTGATGGACGATGGAGATTCACCTAATAAATTCTTGCCTCAAAGTGTTGATCCCATGTTAATGTAG 354 0.4463 MELDHGMDFEDYFPYMISSLGAEGFIGELCNGFSLLMDANKGLITFESLKMNCCLLGLEVRDDDELLCMLMEGDLDGDGALNQMEFCILMFRISPCLMDDGDSPNKFLPQSVDPMLM* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1407 117 ProSiteProfiles EF-hand calcium-binding domain profile. 61 96 IPR002048 GO:0005509
Amo18g1407 117 PANTHER CALCIUM-BINDING PROTEIN PBP1-LIKE 4 101 - -
Amo18g1407 117 ProSitePatterns EF-hand calcium-binding domain. 74 86 IPR018247 -
Amo18g1407 117 Pfam EF-hand domain pair 41 92 IPR002048 GO:0005509
Amo18g1407 117 SUPERFAMILY EF-hand 28 108 IPR011992 -
Amo18g1407 117 Gene3D - 7 107 - -
Amo18g1407 117 PANTHER CALCIUM-BINDING PROTEIN KIC 4 101 IPR044205 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1407 Amo-Chr18 26309630 26310136 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1407 8 99 EF-hand Containing Proteins AT4G27280 61.290 5.18e-34 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1407 K24345 - gmx:100794479 179.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1407 18 26309630 26310136 Amo18g1407 18 26309630 26310136 ECH