Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10595 ATGGCATCAAGTTCAAAGAAGAATGGTGGGTCAGTTGTTTTTGAGGATTTCTTTCCTTCAATGATGGAGAAGCTAGGAAGTGAAGGGTTTATGAAAGAGTTGGCAAATGGATTCAATGTGTTAATGGATAGAGAGAAGAAAGTGATAACATTTGAGAGCTTGAAGAAGAACTCGGCATTGCTCGGGTTAGAAGGTATGAGTGATGATGACATTACTTGCATGTTAAGAGAAGGTGATATGGATGGAGATGGAGCTCTAAGTGAGATGGAGTTTTGCACTCTCATGTTTAGGTTGAGTCCTTCTTTGATGAATGATTCTAAGCAACTTTTGGGACAAGTTATTTTCAATGGATATTGA 357 0.3838 MASSSKKNGGSVVFEDFFPSMMEKLGSEGFMKELANGFNVLMDREKKVITFESLKKNSALLGLEGMSDDDITCMLREGDMDGDGALSEMEFCTLMFRLSPSLMNDSKQLLGQVIFNGY 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10595 118 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Vifa1g10595 118 ProSitePatterns EF-hand calcium-binding domain. 79 91 IPR018247 -
Vifa1g10595 118 Gene3D - 12 116 - -
Vifa1g10595 118 SUPERFAMILY EF-hand 6 104 IPR011992 -
Vifa1g10595 118 Pfam EF-hand domain pair 45 97 IPR002048 GO:0005509
Vifa1g10595 118 PANTHER CALCIUM-BINDING PROTEIN KIC 12 113 IPR044205 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10595 Vifa-Chr1 1784413686 1784414042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10595 14 114 EF-hand Containing Proteins AT4G27280 59.804 2.45e-39 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10595 K24345 - gmx:100306210 183.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10595 1 1784413686 1784414042 Vifa1g10595 1 1784413686 1784414042 ECH