Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04997 ATGGCATCCAAGAGGAACACGATTGTTTTCGAGGACTACTTCCCGGCAATGATGGAGAAACTGGGTACTGAGGGGTTTATGAAGGAGCTGACAAATGGTTTTCAGTTGTTGATGGACAGAGAGAAGAAAGTGATAACTTTTGAGAGCTTGAAGAGGAATGCTGCATTGCTTGGGTTGGAGGGGATGAATGATGATGAGATCGTGTGCATGCTAAGAGAAGGCGATCTTGATGGGGATGGGGCTCTGGATGAGATGGAGTTCTGCACCCTCATGTTCAGGTTGAGTCCTGCTTTGATGAATAACTCTAAGGAACTTTTGGAGGAAGCCATTTTTAATGAACTTTAG 345 0.4493 MASKRNTIVFEDYFPAMMEKLGTEGFMKELTNGFQLLMDREKKVITFESLKRNAALLGLEGMNDDEIVCMLREGDLDGDGALDEMEFCTLMFRLSPALMNNSKELLEEAIFNEL. 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04997 114 Pfam EF-hand domain pair 41 93 IPR002048 GO:0005509
Seca6g04997 114 PANTHER CALCIUM-BINDING PROTEIN KIC 8 113 IPR044205 GO:0005509
Seca6g04997 114 Gene3D - 8 114 - -
Seca6g04997 114 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
Seca6g04997 114 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Seca6g04997 114 SUPERFAMILY EF-hand 4 91 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04997 Seca-Chr6 117304196 117304540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04997 10 110 EF-hand Containing Proteins AT4G27280 60.784 1.54e-38 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04997 K24345 - gmx:100306210 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04997 6 117304196 117304540 Seca6g04997 6 117304196 117304540 ECH