Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00453 ATGGCATCCAAGAAGAACACGGTTGTATTTGAGGACTACTTCCCTGCAATGGTGGAGAAACTGGGTACTGATGGGTTTATGAAGGAGCTGACAAATGGTTTTCAATTGTTGATGGACAGAGAGAAGAAAGTGATCACTTTTGAAAGCTTGAAGAGGAACTCTGCATTGCTTGGGTTGGGGGAGATGAGTGATGATGAGATCAGGTGCATGTTAAGAGAAGGTGATCTTGATGGGGATGGTGCTCTTGATGAGATGGAGTTCTGCACTCTCATGTTCAGGTTGAGTCCTGATTTGATGAATAACTCTAAGGAACTTTTGGAGGAAGCCATTTACACTGGCCTTTAG 345 0.4377 MASKKNTVVFEDYFPAMVEKLGTDGFMKELTNGFQLLMDREKKVITFESLKRNSALLGLGEMSDDEIRCMLREGDLDGDGALDEMEFCTLMFRLSPDLMNNSKELLEEAIYTGL* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00453 114 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Rops11g00453 114 Gene3D - 8 113 - -
Rops11g00453 114 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
Rops11g00453 114 PANTHER CALCIUM-BINDING PROTEIN KIC 8 110 IPR044205 GO:0005509
Rops11g00453 114 Pfam EF-hand domain pair 41 93 IPR002048 GO:0005509
Rops11g00453 114 SUPERFAMILY EF-hand 4 98 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00453 Rops-Chr11 6139583 6140220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00453 10 110 EF-hand Containing Proteins AT4G27280 61.765 3.57e-42 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00453 K24345 - gmx:100306210 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00453 11 6139583 6140220 Rops11g00453 11 6139583 6140220 ECH