Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00358 ATGGCATCAAATTCCAAGAAGAATGGTGCATCGGTTGTTTTTGAAGACTACTTCCCTTCAATGATGGAGAAACTAGGAAGTGAAGGGTTTATGAAGGAATTGACAAATGGTTTTAATGTGTTGATGGACAGAGAGAAGAAAGTGATAACATTTGAGAGCTTGAAGAAGAACTCTGCATTGCTTGGGTTGGAAGGTATGAGTAATGAAGAGATTATATGCATGCTTAGAGAAGGTGATCTTGATGGAGATGGAGCTCTTGATGAGATGGAGTTTTGCACCCTCATGTTTAGGCTGAGTCCTGCTTTGATGAATGACTCTAAGCAACTGTTGGAAGAAGCTATTTTCACTGGCATTTGA 357 0.3978 MASNSKKNGASVVFEDYFPSMMEKLGSEGFMKELTNGFNVLMDREKKVITFESLKKNSALLGLEGMSNEEIICMLREGDLDGDGALDEMEFCTLMFRLSPALMNDSKQLLEEAIFTGI 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00358 118 PANTHER CALCIUM-BINDING PROTEIN KIC 12 114 IPR044205 GO:0005509
Trre3g00358 118 SUPERFAMILY EF-hand 28 105 IPR011992 -
Trre3g00358 118 Gene3D - 12 117 - -
Trre3g00358 118 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Trre3g00358 118 ProSitePatterns EF-hand calcium-binding domain. 79 91 IPR018247 -
Trre3g00358 118 Pfam EF-hand domain pair 45 97 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00358 Trre-Chr3 2325735 2326091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00358 14 114 EF-hand Containing Proteins AT4G27280 57.843 1.05e-37 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00358 K24345 - gmx:100306210 181.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00358 3 2325735 2326091 Trre3g00358 3 2325735 2326091 ECH