Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01036 ATGGAACTGGACCATGTTATGGACTTCGAGGACTATTTCCCTTCAATGATTGCACGCTTAGGAGCAGAAGGGTTCATCGGAGAGCTTTGCAGTGGCTTCCGTTTGCTGATGGACGTGAACAAGGGTCTCATCACGTTCGAGAGCTTGAAGTTGAACTGTTACTTGCTCGGTTTGGACGTTAGGGACGACGAGCTCGCATGCATGCTAATGGAGGGTGATTTGGATGGAGATGGTGCTCTCAGCCAAATGGAGTTTTGCATTCTCATGTTCAGGCTCAGTCCATGCTTGATGGACACACCCAAAATGCCTTCGGAGAATCCCATCTTCATCTAA 333 0.4865 MELDHVMDFEDYFPSMIARLGAEGFIGELCSGFRLLMDVNKGLITFESLKLNCYLLGLDVRDDELACMLMEGDLDGDGALSQMEFCILMFRLSPCLMDTPKMPSENPIFI 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01036 110 Pfam EF-hand domain pair 41 91 IPR002048 GO:0005509
Cca10g01036 110 SUPERFAMILY EF-hand 4 89 IPR011992 -
Cca10g01036 110 ProSitePatterns EF-hand calcium-binding domain. 73 85 IPR018247 -
Cca10g01036 110 Gene3D - 6 106 - -
Cca10g01036 110 PANTHER CALCIUM-BINDING PROTEIN KIC 4 103 IPR044205 GO:0005509
Cca10g01036 110 ProSiteProfiles EF-hand calcium-binding domain profile. 60 95 IPR002048 GO:0005509
Cca10g01036 110 PANTHER CALCIUM-BINDING PROTEIN PBP1-LIKE 4 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01036 Cca-Chr10 12686836 12687746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01036 8 101 EF-hand Containing Proteins AT4G27280 59.375 5.76e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01036 K24345 - gmx:100794479 190.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01036 10 12686836 12687746 Cca10g01036 10 12686836 12687746 ECH