Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4472 ATGGCTACTACACCAAACTCCCACCAACAACAAGCTCAGTTCCAAGACCACCTACCTCTCATGGCCAACAAGCTAGGAGGTGATGGCCTAATAGACGAGCTCTGCAACGGGTTTAACCTCTTGATGGATGCAGAAAAAGGGGTCATTACTTTTGATAGTCTCAAGAGGAATGCCCATTTTCTTGGGCTACAGGACCTCAGTGATGAGGATCTTCGTTCCATGATCGTGGAAGGTGATTTTGATCGTGATGGGGCTCTAAGTCAGATGGAGTTTTGTGTCTTGATGTTTAGACTGAGTCCTGAACTCATGGAAGGGTCTCAGATGTGGTTGGAGCAAGTGCTTGAGCAAGAAATGAAAGATTTTTTGTAA 369 0.4553 MATTPNSHQQQAQFQDHLPLMANKLGGDGLIDELCNGFNLLMDAEKGVITFDSLKRNAHFLGLQDLSDEDLRSMIVEGDFDRDGALSQMEFCVLMFRLSPELMEGSQMWLEQVLEQEMKDFL* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4472 122 ProSitePatterns EF-hand calcium-binding domain. 79 91 IPR018247 -
Lja3g4472 122 Gene3D - 11 121 - -
Lja3g4472 122 PANTHER CALCIUM-BINDING PROTEIN KRP1 8 121 - -
Lja3g4472 122 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Lja3g4472 122 SUPERFAMILY EF-hand 8 95 IPR011992 -
Lja3g4472 122 PANTHER CALCIUM-BINDING PROTEIN KIC 8 121 IPR044205 GO:0005509
Lja3g4472 122 Pfam EF-hand domain pair 45 97 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4472 Lja-Chr3 86341596 86342350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4472 2 117 EF-hand Containing Proteins AT5G54490 66.667 2.77e-53 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4472 K24345 - gmx:100306396 192.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4472 3 86341596 86342350 Lja3g4472 3 86341596 86342350 ECH