Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04498 ATGGAATTGGATTTGGTTATGGATTTTGAGGACTATTTTCCATCCATGGTTGCACGTTTTGGAGCAGAAGGGTTTATAAGTGAACTTTGCAACGGGTTTCGTTTACTTATGGATGTGAACAAAGGTCTTATAACATTTGAGAGCTTGAAGATGAATTGTTCCATGCTTGGTTTGGAGGTTAGGGATGATGAGCTTGTGTGCATGTTAATGGAAGGTGATTTGGATGGAGATGGTGCTTTAAATCAAATGGAGTTTTGCATTCTCATGTTTAGGTTGAGTCCATGTTTAATGGATGGACCTAAAATGTGCAACACCATTACTCATCAAGGTGTGGATCCTATGTTAATGCGATGgaatatacatgaaagaaatgCTGTTAGCGCTGCACATGAAATGCGGAAGCCACGTAAAGGAGAGAGAGAACGCAAACCTCACAACATGTGGAATGATTATGTGAAGAAATGA 465 0.3849 MELDLVMDFEDYFPSMVARFGAEGFISELCNGFRLLMDVNKGLITFESLKMNCSMLGLEVRDDELVCMLMEGDLDGDGALNQMEFCILMFRLSPCLMDGPKMCNTITHQGVDPMLMRWNIHERNAVSAAHEMRKPRKGERERKPHNMWNDYVKK 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04498 154 PANTHER CALCIUM-BINDING PROTEIN PBP1-LIKE 5 104 - -
Tsu02g04498 154 PANTHER CALCIUM-BINDING PROTEIN KIC 5 104 IPR044205 GO:0005509
Tsu02g04498 154 MobiDBLite consensus disorder prediction 129 154 - -
Tsu02g04498 154 ProSitePatterns EF-hand calcium-binding domain. 73 85 IPR018247 -
Tsu02g04498 154 Gene3D - 6 109 - -
Tsu02g04498 154 SUPERFAMILY EF-hand 6 89 IPR011992 -
Tsu02g04498 154 Pfam EF-hand domain pair 41 91 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04498 Tsu-Chr2 53918275 53920267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04498 9 105 EF-hand Containing Proteins AT5G54490 57.576 3.85e-34 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04498 K24345 - gmx:100794479 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04498 02 53918275 53920267 Tsu02g04498 02 53918275 53920267 ECH