Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0382 ATGGAAGTTGAGGGCGGAGTGCAGTTTGAGGACTACTTCCCATCCATGATCGAGCGGTTGGGGGCCGAGGGTTTCATAGTAGAGCTCTGCAATGGGTTTCACTTGCTGATGGACGTGGAAAAAGGGCTCATCACATTTGAGAGCTTGAGGAGGAACACCATTCTGCTAGGGTTGCAGGACATGGGAGATGATGAGCTTGTGTGCATGTTGAGCGAGGGAGACTTGGATGGAGATGGGGCTCTCAATCAGATGGAGTTTTGCATTCTCATGTTCAGATTGAGTCCTGGTTTGATGGACGGACCCAAGCAGTGGGTGGAGGAGATATAA 327 0.5076 MEVEGGVQFEDYFPSMIERLGAEGFIVELCNGFHLLMDVEKGLITFESLRRNTILLGLQDMGDDELVCMLSEGDLDGDGALNQMEFCILMFRLSPGLMDGPKQWVEEI* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0382 108 PANTHER CALCIUM-BINDING PROTEIN KIC 7 107 IPR044205 GO:0005509
Vvi19g0382 108 SUPERFAMILY EF-hand 23 99 IPR011992 -
Vvi19g0382 108 ProSitePatterns EF-hand calcium-binding domain. 74 86 IPR018247 -
Vvi19g0382 108 Gene3D - 7 108 - -
Vvi19g0382 108 Pfam EF-hand domain pair 40 92 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0382 Vvi-Chr19 4197164 4200016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0382 8 108 EF-hand Containing Proteins AT5G54490 60.784 8.43e-40 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0382 K24345 - vvi:100252031 221.861