Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1887 ATGGTATTGACTTCTACCCTCACATCCTTGACAACATTGCTTTGCCTCTGTATGTTTTGCGTTAATGCAACTACCCACAATGAAATTTTGCAAATGGGGCAGTCATTGAGAATCTCAGACACCATTCTTTCTCGCGGTGGGAACTTCGAACTGGGCTTTTTCTCCACAGTCAGAGAGAACTCCACCAAGTACTATGTAGGCATACGGTATAAAAAGGTTCCAAATGACAAGATTGTGTGGGTTGCTAACAGAGACTACGCACTTGAGACATCCTCAGCTGTTCTTACTGTTCAACCTGATGGAAATATTGCGATCATAGATGGACAGGTGACGTACCGCGTGAACAAGGCTTCAACCAATTTTAGTACCTATGTCATGCTCTTGGATTCAGGAAACTTGTTACTGCTGAGAAACTCAAATCAAGCGATTTTGTGGCAGAGTTTTGATAATCCTACGGATACCCTTTTACCTGGAATGACCCTAGGACATGATGTCTCAGGTTACACTTGGTCATTGAGATCATGGACAACTGCAGACGACCCTGCCCCGGGAGCTTTTTCCCTCGAGTATGATTCTGGCAGGGCCAGTCTAATCATCAACAACGGTTCTAATGTGTTTTGGATTGATGACCATTCCAATGACACTATTGCCAATGTTATTAGCCGAAGTGATGTGGAATACTACAATAGCTATTTCACTTGGCGGGTTGGTAATGACTCTAGGCTGGTACTTGAAGTGTTTGGGGAGCTCAACCAGGAGTATTGGTCAAACGAAGAAAAGCGTTGGGTTACTATTCGGTCATCAAAGTGTGGAACTAACAATTTGTGTGGAGGTTTTTCGATTTGTAACCCGCAAGCTCTTCACCCATGTGACTGTCTCCCTGGTTTCAAGCCATTTGATGCTGATTCTTGGAGGAAGGGGGACACATCAACTGGCTGTGTCAGGAAAACAGAATTGTCGTGCAGCGACAGAAGCAGTAATAGTAATAAACCCGATGATGGATTCCTCCTGTTCAATGAAGTTCAATTACCACAAACTTTGAACGGATACAGCAAGCTAAAGATTGATAGAGCAAGAGCGTGTGAAAGTACTTGCTCTAGAAATTGTTCTTGTGTTGCTTATTCTTATGATTTGAACGGTACCTGCCAGTTGTGGCTTGATGAGGTGTTGAGTCTAAAGAACATCTCAATGTATGTGGAACATGTTGATAATACCAATCCAGTTTTTTACCTCAAACTTGCTGCCTCAGAATTGGTTCTTGCTGGGGAAGATTTGCTACATTTTGATGTAGGCATGAGCATGAAAGCTTGGGATCTATGGACAAACAATTCGGGAATGGACCTAATGGATCCAGCATTGGATGATAGTGATACCACTAGTGGCAGTAAGCATACAGTGCCAAGATATGTTAACATAGGACTTCTCTGCGTACAAGAAAGTCCAGCAGATAGACCAACCATGTCTGATGTTGTATCAATGATTGGGAATGACACTGTGGCCCTTCCTTCTCCTAAACCACCTGCATTTCTAAATGTGAGAGGTAAAGAGAATTCAATATTGCCCAGTAGCATGCCAGAAAGCGTTTCAGTGAATGTTATCACAGATTCACTTGTGGAAGCAAGATGA 1626 0.4293 MVLTSTLTSLTTLLCLCMFCVNATTHNEILQMGQSLRISDTILSRGGNFELGFFSTVRENSTKYYVGIRYKKVPNDKIVWVANRDYALETSSAVLTVQPDGNIAIIDGQVTYRVNKASTNFSTYVMLLDSGNLLLLRNSNQAILWQSFDNPTDTLLPGMTLGHDVSGYTWSLRSWTTADDPAPGAFSLEYDSGRASLIINNGSNVFWIDDHSNDTIANVISRSDVEYYNSYFTWRVGNDSRLVLEVFGELNQEYWSNEEKRWVTIRSSKCGTNNLCGGFSICNPQALHPCDCLPGFKPFDADSWRKGDTSTGCVRKTELSCSDRSSNSNKPDDGFLLFNEVQLPQTLNGYSKLKIDRARACESTCSRNCSCVAYSYDLNGTCQLWLDEVLSLKNISMYVEHVDNTNPVFYLKLAASELVLAGEDLLHFDVGMSMKAWDLWTNNSGMDLMDPALDDSDTTSGSKHTVPRYVNIGLLCVQESPADRPTMSDVVSMIGNDTVALPSPKPPAFLNVRGKENSILPSSMPESVSVNVITDSLVEAR 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1887 541 CDD PAN_AP_plant 317 414 - -
Ssu3g1887 541 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 436 538 - -
Ssu3g1887 541 Pfam D-mannose binding lectin 78 175 IPR001480 -
Ssu3g1887 541 ProSiteProfiles PAN/Apple domain profile. 321 414 IPR003609 -
Ssu3g1887 541 SMART ntp_6 330 405 IPR003609 -
Ssu3g1887 541 Pfam PAN-like domain 330 391 IPR003609 -
Ssu3g1887 541 ProSiteProfiles Bulb-type lectin domain profile. 27 148 IPR001480 -
Ssu3g1887 541 SMART blect_4 33 151 IPR001480 -
Ssu3g1887 541 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 420 - -
Ssu3g1887 541 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 181 IPR036426 -
Ssu3g1887 541 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 436 538 - -
Ssu3g1887 541 Gene3D Transferase(Phosphotransferase) domain 1 417 500 - -
Ssu3g1887 541 Gene3D - 22 148 IPR036426 -
Ssu3g1887 541 Pfam S-locus glycoprotein domain 218 298 IPR000858 GO:0048544
Ssu3g1887 541 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 24 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1887 Ssu-Chr3 58739863 58743560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1887 436 510 Receptor kinase-like Gene Family AT4G11480 46.667 2.07e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1887 - - gmx:100811148 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1887 3 58739863 58743560 Ssu3g1887 3 58739863 58743560 ECH