Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1071 ATGGAACTGGACTACCTTTTGGACTTCGAGGACTACTTCCCGTCCATGATTGCGCGCATGGGGGCGGAAGGGTTCATTGGGGAGCTCTGCAACGGGTTTCGCTTGCTGATGGACGCGAACAAGGGCCTCATCACGTTCGAGAGCTTGAAGACGAACTGTTACTTGCTGGGGCTGGACGTGAGGGACGACGAGCTCGTGTGCATGCTAATGGAGGGTGATTTGGACGGAGACGGTGCGCTTAGCCAAATGGAGTTTTGCATTCTCATGTTTAGGCTCAGTCCTTGCCTGATGGACGGGCCTAAAATGTGCCCTACTCAGGGTGCGGATCCCGTGTTGATGATATAA 345 0.542 MELDYLLDFEDYFPSMIARMGAEGFIGELCNGFRLLMDANKGLITFESLKTNCYLLGLDVRDDELVCMLMEGDLDGDGALSQMEFCILMFRLSPCLMDGPKMCPTQGADPVLMI 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1071 114 PANTHER CALCIUM-BINDING PROTEIN KIC 4 104 IPR044205 GO:0005509
Ssu8g1071 114 ProSitePatterns EF-hand calcium-binding domain. 73 85 IPR018247 -
Ssu8g1071 114 SUPERFAMILY EF-hand 6 89 IPR011992 -
Ssu8g1071 114 Gene3D - 7 103 - -
Ssu8g1071 114 ProSiteProfiles EF-hand calcium-binding domain profile. 60 95 IPR002048 GO:0005509
Ssu8g1071 114 Pfam EF-hand domain pair 41 91 IPR002048 GO:0005509
Ssu8g1071 114 PANTHER CALCIUM-BINDING PROTEIN PBP1-LIKE 4 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1071 Ssu-Chr8 18678946 18679290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1071 8 101 EF-hand Containing Proteins AT4G27280 59.375 2.33e-34 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1071 K24345 - gmx:100794479 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1071 8 18678946 18679290 Ssu8g1071 8 18678946 18679290 ECH